[PDF] Top 20 Exploring the space of gene/species reconciliations with transfers
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Exploring the space of gene/species reconciliations with transfers
... Abstract Reconciliations between gene and species trees have important applications in the study of genome evolution ...quantification of transfer ...study the underlying ... Voir le document complet
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Resolution and reconciliation of non-binary gene trees with transfers, duplications and losses
... on the simulated data ...2010), with an LG+ 4+I model and SH branch supports. For this data set, the accuracy of TERA, ALE, TreeFix-DTL, MowgliNNI, JPrIME-DLTRS and PhyML were compared by ... Voir le document complet
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An Efficient Algorithm for Gene/Species Trees Parsimonious Reconciliation with Losses, Duplications and Transfers
... assess the performance of parsimony, we calculated the most parsimonious reconciliations for a large scale simulated data set that was obtained using a probabilistic model of ... Voir le document complet
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Copy number variations in the gene space of Picea glauca
... glauca. The genes involved likely responded to different selection pressures that promoted their partial or complete suppression from the ...population. The transmission of the BT103424 ... Voir le document complet
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Accounting for gene tree uncertainty improves gene tree accuracy as well as duplications, transfers and losses predictions
... A gene family is a group of genes descended from a common ancestor that retains simi- lar sequences and often similar ...A species tree depicts the evolutionary history of a group ... Voir le document complet
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Inferring incomplete lineage sorting, duplications, transfers and losses with reconciliations
... Impact of incomplete lineage sorting on simple populations of 4 haploid ...individuals. The originating population contains a single blue allele for the considered ...As the blue and ... Voir le document complet
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Lateral gene transfers have polished animal genomes: lessons from nematodes
... polysaccharides of cell walls, ...cases the closest relatives were found in bacteria from the ...nodes of the nematoda ...bacterial species appear as poten- tial donors for ... Voir le document complet
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An automated approach for the identification of horizontal gene transfers from complete genomes reveals the rhizome of Rickettsiales.
... been the result of the co-habitation of Francisella and other species within the same ...instance of HGT from Aedes species to two Wolbachia strains (Additional file ... Voir le document complet
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Biases of STRUCTURE software when exploring introduction routes of invasive species
... determine the invasion success (Keller and Taylor 2008 ...characteristics of their introductions typically include the number of independent introductions from the native area and ... Voir le document complet
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What nematode genomes tell us about the importance of horizontal gene transfers in the evolutionary history of animals
... orizontal gene transfer (HGT), the transmission of a gene from one species to another by means other than direct vertical descent from a common ancestor, has been recognized as an ... Voir le document complet
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Exploring the Microbiota of Diabetic Foot Infections With Culturomics
... assessing the bacterial diversity of DFI samples may have an impact on clinical ...practice. The second observation is that S. aureus was the most prevalent ...in the different samples, ... Voir le document complet
9
Contribution of lateral gene transfers to the genome composition and parasitic ability of root-knot nematodes.
... Lateral gene transfers (LGT), species to species transmission of genes by means other than direct inheritance from a common ancestor, have played significant role in shaping prokaryotic ... Voir le document complet
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The dial-a-ride problem with transfers
... for the VRPTW, feasibility checking in local search methods has to be efficiently enforced for the ...DARP. The maximum ride time constraint complicates this task significantly and several algorithms ... Voir le document complet
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Ancient Adaptive Lateral Gene Transfers in the Symbiotic Opalina - Blastocystis Stramenopile Lineage
... by the mitochondrial complex II catalyzing the reverse reaction as a fumarate reductase (van Hellemond and Tielens 1994; Tielens et ...reduce the respiratory chain without using the ... Voir le document complet
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Exploring the conformational space of a receptor for drug design: an ER α case study
... LBVS with SBVS is emerging as a way to compensate limitations of each of these complementary ...to the increasing number of both atomic structures and affinity ...Usually, the ... Voir le document complet
9
Exploring the chemical space of 1,2,3-triazolyl triclosan analogs for discovery of new antileishmanial chemotherapeutic agents
... Finally, the physicochemical parameters were calculated in silico for the active compounds of the library using Data Warrior software 33 (Figure ...Inf.). The parameters of ... Voir le document complet
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Modeling the Multiple Facets of Speciation-with-Gene-Flow toward Inferring the Divergence History of Lake Whitefish Species Pairs (Coregonus clupeaformis)
... populations with asymmet- rical N e is expected to occur from the larger to the smaller population ( Beysard et ...consistent with the inferred asymmetrical direction of ... Voir le document complet
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Exploring new chemical space by stereocontrolled diversity-oriented synthesis
... analogs of the natural product emetine ...Libraries of Analogs of Individual Natural Products tetrahydroisoquinolines ...2.2. The With the goal of obtaining simple ... Voir le document complet
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Intergenerational transfers and the stability of public debt with short-lived governments
... survey of retirement Cairncross (2004) writes: “A larger generation of old folk than ever before will need support for longer than ever before from a population of working age that is shrinking ... Voir le document complet
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Exploring the Correlation Between M/EEG Source-Space and fMRI Networks at Rest
... Estimation of regional time series First, the MRI template “Colin27” (Holmes, Hoge et ...2011). The lead field matrix was then computed for a cortical mesh of 15000 vertices using OpenMEEG ... Voir le document complet
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