Genomics and Functional Genomics
Comparative and Functional Genomics of Rhodococcus opacus PD630 for Biofuels Development
... phospholipids and triacylglycerols (TAGs) or processed by number of other ...II and MAS products come together to form compartments within ...proteins and type I protein ...domains and type 2 ...
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Amphioxus functional genomics and the origins of vertebrate gene regulation
... plan and evolved highly distinctive genomes that have been sculpted by two whole-genome ...lanceolatum) and characterize DNA methylation, chromatin accessibility, histone modifications and ...
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Integrative data mining in functional genomics of Brassica napus and Arabidopsis thaliana
... ESTs and promoter sequences, and provides data analysis results generated by using various ...contigs and genes while also proposing possible orthologs for any gene of interest in related ...model ...
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Towards functional genomics of transcription factor genes associated to growth and wood formation in maritime pine
... Jean-François Trontin, Concepción Avila, Sandrine Debille, Fernando de la Torre, Jorge El-Azaz, Belen Pascual, Francis Canlet, Caroline Teyssier,. Nathalie Boizot, Claire Le Mette, et al[r] ...
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Deconvolution of seed and RNA-binding protein crosstalk in RNAi-based functional genomics
... expression and 3′ UTR reporter analysis confirmed that shRNAs with IGF2BP2 motif- overlapping seeds target HMGA2 mRNA and 3′ UTR ...wild-type and triple KO mesenchymal stem cells (Dicer KO and ...
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Muscle Gene Sets: a versatile methodological aid to functional genomics in the neuromuscular field
... tools and gene set collections A commonly used approach to pathway analysis is func- tional enrichment ...function, and stat- istical tools are applied to test how this function behaves within the omics ...
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Single-cell genomics of multiple uncultured stramenopiles reveals underestimated functional diversity across oceans
... lineages and of MAST-4 D ...tropical and sub- tropical waters, except in the sub-tropical Atlantic ...MAST-3A, and chrysophyte H1). Finally, chrysophyte H2 and MAST-3F are low-abundance spe- ...
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Comparative Functional Genomics of the Fission Yeasts
... transposons and reorganization of centromere structure Transposons and other repetitive sequences are thought to be crucial for centromeric function through the maintenance of heterochromatin ...transposons ...
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OryGenesDB 2008 update: a database interoperability for functional genomics of rice.
... (B) and display the results (C and D) after providing a login and a ...workflow and (D) gene report for the corresponding locus name ...phenotype and phylogenomic predictions ...
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Unlocking the barley genome by chromosomal and comparative genomics
... 5A, and 7B accu- rately identified (Figure 4A; see Supplemental Figure 5 ...4A, and 5A (Qi et ...2AL, and 2DL, all long arms of homeologous group 5 chromosomes; see Supplemental Figure 5 online); ...
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Hardwood tree genomics: unlocking woody plant biology
... (SMRT) and related assembly algorithms from PacBio ( Eid et ...repeats and improve contiguity of ...annotation and a genome ( Jiao et ...haplotypes and produce a single reference despite high ...
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OrthoInspector 3.0: open portal for comparative genomics
... clade and is colored according to the proportion of species in the clade with at least one ...label and a color ...menu and (3) the presence/absence constraints using the phylogenetic ...
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A functional genomics screen identifies diverse transcription factors that regulate alkaloid biosynthesis in Nicotiana benthamiana
... Access and use of this website and the material on it are subject to the Terms and Conditions set forth at A functional genomics screen identifies diverse transcription factors that ...
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ArrayExpress update: from an archive of functional genomics experiments to the atlas of gene expression
... (8), and aggregate the computed multiple test statistics for inter- ...annotation and curation of experiments in the ArrayExpress Warehouse allows the application of this generic method to data from ...
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Plant cell wall functional genomics: Novelties from proteomics
... synthesis and degradation determines transcript abundance, the majority of studies only measure steady state transcript levels, largely due to the technical simplicity with which they are determined ...protein, ...
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Bioinformatics opportunities in Genomics and Genetics
... Merwe, Functional analyses of NSF1 in wine yeast using Interconnected Correlation Clustering and Molecular Analyses, PLOS One 2012 [submitted under PCOMPBIOL-D-12-01509] ...
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Towards a tailored indoor horticulture: a functional genomics guided phenotypic approach
... laser- and white light-grown plants to evaluate the impact of variable light exposure on the proteome of the plants as well as relate this molecular data to the physiological data collected from the same plants 17 ...
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MasterPATH: network analysis of functional genomics screening data
... genes) and 2710 edges without duplicated edges. The centrality score and the p-value were calculated for each node and path in the subnetwork according the procedure described in the Methods ...3 ...
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Chromosome-based genomics in the cereals
... target, and thus the development of many localized molecular ...2004) and rye ...hybridization and designed to detect and type DNA variation at several hundred genomic loci in ...TE and ...
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Genomics of Multiple Myeloma
... expression and on the various 14q32 recurrent trans- ...2006 and identified seven subclasses of ...MMSET and/or FGFR3 ...third and fourth groups CD1 and ...genes, and one defined ...
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