Reaction networks
A Logic for Checking the Probabilistic Steady-State Properties of Reaction Networks
... networks based on the measurements of asymptotic first and second moments of the trajectories. After introducing the logic, we have demonstrated that the F -SAT problem is NP-hard. We provided an algorithm which ...
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Structural simplification of chemical reaction networks preserving deterministic semantics
... chemical reaction networks preserving the deterministic ...for reaction networks that can eliminate intermediate molecules at equilibrium, without assuming that all molecules are at ...
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Normalizing Chemical Reaction Networks by Confluent Structural Simplification
... Abstract. Reaction networks can be simplified by eliminating linear intermediate species in partial steady ...given reaction network, a unique normal form will be obtained independently of the ...
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An Automated Model Reduction Method for Biochemical Reaction Networks
... biochemical reaction networks governed by various types of enzyme kinetics rate laws with non-autocatalytic reactions, each of which can be reversible or ...a reaction network as a model of a network ...
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Qualitative Reasoning for Reaction Networks with Partial Kinetic Information
... of reaction networks in systems biology often require full kinetic infor- mation, while only partial information on activators and inhibitors is available in ...metabolic networks [ 11 , 15 ...
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Simplification of Reaction Networks, Confluence and Elementary Modes
... for reaction networks with deterministic semantics was first presented by Radulescu etb ...simplifying reaction networks with kinetic expressions in partial steady ...
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Structural simplification of chemical reaction networks in partial steady states
... chemical reaction networks with partial steady state semantics assuming that the concentrations of some but not all species are ...general reaction networks with some but few restrictions on ...
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Graphical Requirements for Multistationarity in Reaction Networks and their Verification in BioModels
... gene networks have been proved by Soul´ e with high generality for dynamical systems defined by differential ...(protein) reaction networks however, those conditions do not provide information since ...
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Compiling Elementary Mathematical Functions into Finite Chemical Reaction Networks via a Polynomialization Algorithm for ODEs
... 10. Ramiz Daniel, Jacob R. Rubens, Rahul Sarpeshkar, and Timothy K. Lu. Synthetic analog computation in living cells. Nature, 497(7451):619–623, 05 2013. 11. François Fages, Guillaume Le Guludec, Olivier Bournez, and ...
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Influence Networks compared with Reaction Networks: Semantics, Expressivity and Attractors
... influence networks have an expres- sive power weaker than reaction networks in the discrete semantics, since they can only express unitary transition systems, ...
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Bayesian inference of chemical reaction networks
... Chemical reaction networks can quickly become very complex [ 28 , 108 ...zero reaction-rate. Many species in a reaction network such as catalysts or enzymes play a fundamental role in the ...
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Graphical Conditions for Rate Independence in Chemical Reaction Networks
... 5.2 Test of global rate-independence In this section, we test the criterion given in Def. 14 that ensures the rate- independence of all the species of a given CRN. On the 590 reaction models tested, 20 models have ...
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Fractional reaction-diffusion problems
... Preliminaries and background In this chapter, we provide some elementary properties of fractional Laplacian operators, also we introduce the main results concerning to the large time behavior of solutions of ...
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Simulation of a detoxifying organ function: Focus on hemodynamics modeling and convection‐reaction numerical simulation in microcirculatory networks
... f (·, t) ∼ vr,max (hence called maximum rate) (14) 2.3.2 Numerical methods Most liver functions are linked to blood detoxification of substances that have been ingested and digested. The corresponding input con- ...
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Alkali - aggregate reaction in Nova Scotia. IV. Character of the reaction
... https://doi.org/10.1016/0008-8846(73)90091-4 Access and use of this website and the material on it are subject to the Terms and Conditions set forth at Alkali - aggregate reaction in Nova Scotia. IV. Character of ...
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Chemical Reaction Dynamics at Surfaces
... Since equilibrium is established, measurements, by a surface vibrational spectroscopy (high resolution electron energy loss), of the relative populations of CO bound t[r] ...
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LA REACTION CHIMIQUE COURS ET APPLICATIONS
... concentration initiale commune des deux réactifs. Le tableau ci-dessous donne les temps de demi-réaction pour différentes valeurs de C 0. Démontrer que ces données sont compatibles avec[r] ...
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ETUDE THEORIQUE DE LA REACTION DE FISCHER
... Nous constatons que la barrière énergétique nécessaire pour la recombinaison des fragments est 39.68 Kcal/mol pour le mécanisme de Kereselidze, et 16.59 Kcal/mol pour le mécanisme prop[r] ...
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Trend to equilibrium for a reaction-diffusion system modelling reversible enzyme reaction
... In 1925, the enzyme reaction (1) was analysed by Briggs and Haldane [3] by using ordinary differential equations (ODE) derived from mass action kinetics. In their quasi-steady state approximation (QSSA), the ...
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Automatic reaction mechanism generation :
... Using a toy model for phenyldodecane, it was found that 81 species ther- mochemistry parameters are estimated using just 35 independent thermodynamic parameters, whi[r] ...
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