[PDF] Top 20 Analysis of High-Throughput Sequencing and Annotation Strategies for Phage Genomes
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Analysis of High-Throughput Sequencing and Annotation Strategies for Phage Genomes
... amplification of the linker- ligated, size-fractionated DNA fragments, a PCR titration experiment was performed to determine the lowest possible number of amplification rounds suitable to yield sufficient ... Voir le document complet
13
Virus Detection by High-Throughput Sequencing of Small RNAs: Large-Scale Performance Testing of Sequencing Analysis Strategies
... importance of expert analysis is clearly illustrated in the present ...detection of various known nepoviruses such as TBRV in the potato sample by several pipelines, reflected their reporting ... Voir le document complet
10
A Primer on the Analysis of High-Throughput Sequencing Data for Detection of Plant Viruses
... assembly and other parts are obtained through reference guided assembly; such an approach is also known as combined ...Find and Classify Viral Sequences in My Data? Identification of viral ... Voir le document complet
31
Reference-free compression of high throughput sequencing data with a probabilistic de Bruijn graph
... reads and save significant ...case of current read-reordering ...detection of insertion and deletion errors could boost sub- stantially the compression ratio of datasets issued from ... Voir le document complet
15
Study of bacterial populations from oligotrophic soil ecosystems using high throughput sequencing technologies
... Materials and methods Sampling area Plant rhizosphere soils were collected from the Camargue region, situated south of Arles in southern France (43º40’36”N ...Five and six sites, respectively, were ... Voir le document complet
197
Marine protist diversity in European coastal waters and sediments as revealed by high-throughput sequencing
... alone, and this is more critical for protists below 20 µm in size that often lack conspicuous shapes (Massana, ...DNA sequencing of environmental phylogenetic markers has changed our ... Voir le document complet
39
High-throughput proteogenomics of Ruegeria pomeroyi: seeding a better genomic annotation for the whole marine Roseobacter clade.
... number of annotation inaccuracies, in terms of structural annotation, is rather large for ...genome annotation. This is similar to previous proteogenomic reports for ... Voir le document complet
14
UMD-Predictor: A High-Throughput Sequencing Compliant System for Pathogenicity Prediction of any Human cDNA Substitution
... sequence and evolutionary conservation-based methods, protein sequence and structure-based methods, and supervised-learning ...structure and/or function of the encoded ...systems ... Voir le document complet
9
ZebraZoom: an automated program for high-throughput behavioral analysis and categorization
... contact. For core tracking, if the tra- jectories of the two cores merged at a given time point, then the algorithm considered that a collision occurred between the two ...positions of two larvae ... Voir le document complet
13
Annotation of microsporidian genomes using transcriptional signals
... efficient and reliable annotation strategies were then used to enable the annotation of the ...some of which encode proteins harbouring >97% of identity and, in ... Voir le document complet
9
GECKO is a genetic algorithm to classify and explore high throughput sequencing data
... tudies of variation in gene expression, initially through probe-based technology and more recently high throughput sequencing (HTS), have considerably advanced knowledge of ... Voir le document complet
9
BIC-seq: a fast algorithm for detection of copy number alterations based on high-throughput sequencing data
... evolution and disease genomics Boston, MA, ...amplifications and deletions of certain regions in the genome, play an important role in the pathogenesis of cancer and have been shown to ... Voir le document complet
2
Phage-Based Surface Plasmon Resonance Strategies for the Detection of Pathogens
... the high affinity of biotin to streptavidin [101] ; this strategy involves the genetic biotinylation of the capsid heads of the bacteriophages and the natural affinity of the ... Voir le document complet
197
VarAFT: a variant annotation and filtration system for human next generation sequencing data
... genotype and phenotype and can only solve a limited number of diagno- sis and research ...numerous and heterogeneous in their content and filtration ...layers of infor- ... Voir le document complet
10
Non-invasive monitoring of diffuse large B-cell lymphoma by cell-free DNA high-throughput targeted sequencing: analysis of a prospective cohort
... patterns and changes upon treatment. In a prospective cohort of 30 diffuse large B-cell lymphomas (DLBCL), we determined the clinical relevance of cfDNA using targeted next-generation ... Voir le document complet
14
Current impact and future direction of High Throughput Sequencing in plant virus diagnostics: the drivers of COST Action FA1407
... 2 NGS & Viruses Etiology Viral ecology Plant-virus interaction Plant resistance Viral population genetics Taxonomy Current impact on R&D?. Expected impact on diagnostics?[r] ... Voir le document complet
10
Annotating genomes with massive-scale RNA sequencing
... 2.3 for all models). It is likely that some of the novel models correspond to false predictions: if one junc- tion is validated erroneously, it will create a false two-exon ...proportion of models ... Voir le document complet
13
Phenomenal: a software framework for model-assisted analysis of high throughput plant phenotyping data
... archive for the deposit and dissemination of sci- entific research documents, whether they are pub- lished or ...teaching and research institutions in France or abroad, or from public or ... Voir le document complet
3
An automated image-processing pipeline for high-throughput analysis of root architecture in OpenAlea
... Estimation of a root architecture The root architecture is obtained by converting the root graph to an axial tree structure (Godin et ...parent of each segment such that the sum of the edge cost ... Voir le document complet
4
Deciphering splicing with sparse regression techniques in the era of high-throughput RNA sequencing.
... 2.6.1 and NSMAP ( Xia et al. , 2011 ) on both simulated and real ...core of an Intel Xeon CPU X5460 ...2.0.6, and the constructed alignment files are used as in- put to the methods we ... Voir le document complet
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