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[PDF] Top 20 Modeling protein flexibility by distance geometry

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Modeling protein flexibility by distance geometry

Modeling protein flexibility by distance geometry

... : protein conformation, protein flexibility, distance geometry, combinatorial op- timization, protein ...Molecular Distance Geometry Problem (MDGP) is the problem ... Voir le document complet

3

Modeling protein evolution using secondary
structures

Modeling protein evolution using secondary structures

... the modeling of the evolution of a given protein family, and as a result this project intends to achieve three ...accurately modeling protein evolution when used in concert with TM-Align as a ... Voir le document complet

82

Decrypting protein surfaces by combining evolution, geometry, and molecular docking

Decrypting protein surfaces by combining evolution, geometry, and molecular docking

... given protein leads to underestimate the proportion of its surface involved in functional interactions and to the incorrect assessment of protein interface prediction ...a protein surface region used ... Voir le document complet

15

Distance Geometry: A Viewing Help for the Solid-Liquid Phase Transition in Small Systems

Distance Geometry: A Viewing Help for the Solid-Liquid Phase Transition in Small Systems

... considered by Lagrange in his study of the 3-body ...that distance geometry is an invaluable tool in the study of protein conformation, where the problem is to determine all the distances ... Voir le document complet

11

Statistical analysis of welded joints geometry for stochastic modeling and reliability analysis

Statistical analysis of welded joints geometry for stochastic modeling and reliability analysis

... The study driven in this paper is a statistical analysis of one of the parameters. We give figure 2 the organigram which describes the different blocks and steps of the statistical analysis. Only the height of the joint ... Voir le document complet

10

Plasticized protein for 3D printing by fused deposition modeling

Plasticized protein for 3D printing by fused deposition modeling

... layer by layer from a digital three-dimensional model ...obtained by removing material from a ...obtained by 3D printing from a digital model providing the desired properties ...The geometry ... Voir le document complet

7

Bounds on the minimum distance of algebraic geometry codes defined over some families of surfaces

Bounds on the minimum distance of algebraic geometry codes defined over some families of surfaces

... minimum distance d(X, rH, S) under some specific assumptions on the geometry of the surface ...elements by F q and the virtual arithmetic genus of a divisor D by π D , and ... Voir le document complet

22

Multiclass Brain-Computer Interface Classification by Riemannian Geometry

Multiclass Brain-Computer Interface Classification by Riemannian Geometry

... features by a supervised classification ...approach by exploiting directly the covariance structure of the data as the feature of ...Riemannian geometry provides a rich framework to manipulate these ... Voir le document complet

9

A Reinforcement Learning Approach to Protein Loop Modeling

A Reinforcement Learning Approach to Protein Loop Modeling

... The protein loop modeling problem resembles the inverse kinematics (IK) problem in robotics and computer graphics where the protein’s backbone can be viewed as an articulated ...the protein, in ... Voir le document complet

3

Amplitude spectrum distance: measuring the global shape divergence of protein fragments

Amplitude spectrum distance: measuring the global shape divergence of protein fragments

... witnessed by the presence of “magic numbers” in their ...some protein domains in reasonable time with respect to DALI’s objective ...clustering protein fragments, if the similarity of fragments is ... Voir le document complet

17

Smart distance keeping: modeling and perspectives for embedded diagnosis

Smart distance keeping: modeling and perspectives for embedded diagnosis

... In order to estimate 𝜇 𝑚𝑎𝑥 , sliding modes observers can be applied. A hierarchical observer is needed for this esti- mation. In the first step, an observer based on the dynamical equation of the wheels should be ... Voir le document complet

7

NUMERICAL MODELING OF UNSTABLE FLOWS IN CONDUCTS WITH VARIABLE GEOMETRY

NUMERICAL MODELING OF UNSTABLE FLOWS IN CONDUCTS WITH VARIABLE GEOMETRY

... NUMERICAL MODELING OF UNSTABLE FLOWS IN CONDUCTS WITH VARIABLE GEOMETRY Sami RAMOUL 1 , Ali FOURAR 1 , Fawaz MASSOUH 2 Changes in the system flow of a fluid in a conduct often cause sudden changes in ... Voir le document complet

13

Modeling and Control of Multiple Aerial-Ground Manipulator System (MAGMaS) with Load Flexibility

Modeling and Control of Multiple Aerial-Ground Manipulator System (MAGMaS) with Load Flexibility

... bar by the mean of small arm mounted on a passive rotational joint, whose center of rotation coincides with aerial robot center- of-mass (CoM), see ...exerted by the aerial robot on the load as the ... Voir le document complet

9

A Crystal Structure of the Dengue Virus NS5 Protein Reveals a Novel Inter-domain Interface Essential for Protein Flexibility and Virus Replication

A Crystal Structure of the Dengue Virus NS5 Protein Reveals a Novel Inter-domain Interface Essential for Protein Flexibility and Virus Replication

... initiated by several research groups. Using in silico docking guided by reverse genetics, a first model for NS5 from WNV was proposed [ 12 ...NS5 protein from DENV may be flexible and could adopt a ... Voir le document complet

28

Observability, Commitment and Flexibility

Observability, Commitment and Flexibility

... rm. By choosing in exibility, a rm can therefore commit to produce more in the second stage of the game, hence reducing in equilibrium the expected production of the other rm: the strategic value of exibility is ... Voir le document complet

15

Geometry over composition algebras : projective geometry

Geometry over composition algebras : projective geometry

... The following argument works only for A = H k . If z ∈ L(y), then L(z) = L(y), since we have L(z) ⊂ L(y) by associativity. Moreover, since A = H k , we can choose z ∈ L(y) such that z and y are not proportional; ... Voir le document complet

25

Parametric finite element modeling of the thoracic spine. Geometry and mesh evaluations.

Parametric finite element modeling of the thoracic spine. Geometry and mesh evaluations.

... followed by a stress study. The parametric subject-specific modeling method has been applied to the thoracic spine, and paved the way for large-scale clinical studies or dynamic safety ... Voir le document complet

3

Production Flexibility and Hedging

Production Flexibility and Hedging

... We present three results. First, we show that in the presence of flexibility in production, the optimal production decisions are different between a risk- neutral firm and a risk-averse firm. 2 Second, we show that the ... Voir le document complet

15

Functional Poisson approximation in Kantorovich-Rubinstein distance with applications to U-statistics and stochastic geometry

Functional Poisson approximation in Kantorovich-Rubinstein distance with applications to U-statistics and stochastic geometry

... To demonstrate the versatility of our new functional limit theorem, we consider probabilistic approximations of U-statistics over binomial or Poisson input processes. In a first regime, we consider the Poisson ... Voir le document complet

37

Flexibility and hydration of amphiphilic hyperbranched arabinogalactan-protein from plant exudate: a volumetric perspective

Flexibility and hydration of amphiphilic hyperbranched arabinogalactan-protein from plant exudate: a volumetric perspective

... of protein, the effect of this larger amount of protein in the global AGP architecture and the formation of AGP assembly through mainly protein-protein ... Voir le document complet

26

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