[PDF] Top 20 DALIX: optimal DALI protein structure alignment
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DALIX: optimal DALI protein structure alignment
... for protein structure align- ment using DALI scoring, which is an NP-hard ...problem. DALI scoring is based on comparing the inter-residue distance matrices of proteins and is the scoring ... Voir le document complet
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iPBA: a tool for protein structure comparison using sequence alignment strategies.: Structural Alphabet Alignment
... CE, DALI, FATCAT and TMalign (7,18,38,39) (Table ...(‘global’ alignment option), the alignments generated using iPBA has the least ...(CE, DALI and TMalign), iPBA alignments have the best quality ... Voir le document complet
7
CSA: Comprehensive comparison of pairwise protein structure alignments
... pairwise protein structure alignments 7 structure 4clnA, calmodulin is bound to a ligand, in 2bbmA it is ...structural alignment method that determines the longest alignment with ... Voir le document complet
16
Algorithm engineering for optimal alignment of protein structure distance matrices
... by dali and the recom- puted ...an alignment and a corresponding similarity score, resulting in 780 ...using dali and analyze the results. dali evaluates similarities using an empirical ... Voir le document complet
15
Task-Oriented Complex Ontology Alignment: Two Alignment Evaluation Sets
... these alignment sets in complex ontology matching evaluation, population of the ontologies and consensus version (cur- rently in work) should be taken into ... Voir le document complet
16
Atomic structure and defect dynamics of monolayer lead iodide nanodisks with epitaxial alignment on graphene
... substitute the heavier lead atoms (Fig. 6 f). Similar stable four- membered ring configuration have also been reported for monolayer MoS 2 structures 59 . During electron beam irradiation, the vacancies migrated through ... Voir le document complet
14
Sequence Alignment Practical
... global alignment (4 of 4) • Select the most very bottom right cell • Consider different path(s) going to very top left cell – Path is constructed by finding the source cell ... Voir le document complet
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Book Tessera Alignment
... L’association des coloris à la structure de la fibre en font un produit idéal pour habiller les espaces tertiaires les plus contemporains.. De plus, chacun des 8 coloris Highlight de la [r] ... Voir le document complet
2
Stochastic Alignment Processes
... The tendency to align to others is inherent to social behavior, including in animal groups, and flocking in particular. Here we introduce the Stochastic Alignment Problem, aiming to study basic algorithmic aspects ... Voir le document complet
24
Structure-function insights into elusive Mycobacterium tuberculosis protein Rv1916
... crystal structure of Mtb ICL1 C191S mutant complexed with pyruvate and succinate (reaction products of MICL) and the structures of Mtb ICL1 with glyoxylate (PDB ID: 1F8I) as well as ... Voir le document complet
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Indexing and Retrieval of Multiple 3D Protein Structure Representations for the Protein Data Bank
... NRC Publications Archive Archives des publications du CNRC Access and use of this website and the material on it are subject to the Terms and Conditions set forth at Indexing and Retrieval of Multiple 3D Protein ... Voir le document complet
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New protein-DNA complexes in archaea: a small monomeric protein induces a sharp V-turn DNA structure
... MC1 protein concentrations from ...free protein, and K Dapp is the apparent dissociation ...free protein concentration is reasonably approximated by the total protein ... Voir le document complet
13
Application of the Lempel-Ziv complexity to the alignment-free sequence comparison of protein families
... outperforms all other methods at the three lower levels of the SCOP classification, except the very slow SW local alignment at the family level. at superfamily and fold levels, our seq[r] ... Voir le document complet
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Parallel seed-based approach to protein structure similarity detection
... L’archive ouverte pluridisciplinaire HAL, est destinée au dépôt et à la diffusion de documents scientifiques de niveau recherche, publiés ou non, émanant des établissements d’enseignemen[r] ... Voir le document complet
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Improvement of protein structure comparison using a structural alphabet.
... structural alignment algorithm by (i) refining the substitution matrix and (ii) designing an improved dynamic programming ...global alignment based on Needleman- Wunsch algorithm cannot distinguish local ... Voir le document complet
34
Sensitivity of Optimal Control Problems Arising from their Hamiltonian Structure
... of optimal control problems in Section 2, the first question is answered in Section 3, where we focus on Poincaré-Cartan integral ...an optimal trajectory whose fulfillment guarantees that, in the presence ... Voir le document complet
14
Crystal structure of a substrate-engaged SecY protein-translocation channel
... a protein-conducting channel formed by a heterotrimeric membrane protein complex, the prokaryotic SecY or eukaryotic Sec61 ...crystal structure of the active channel, assembled from SecY complex, the ... Voir le document complet
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In silico prediction of protein flexibility with local structure approach
... 4. Conclusion The state-of-the-art on protein flexibility prediction was based on B-factors, directly from X-ray structures experiments. However, this flexibility measure is mainly linked to uncertainty of the ... Voir le document complet
20
Determination of peptide and protein structure by tandem mass spectrometry
... ions are then searched foe masses corresponding to the calculated values. The score for each amino acid extension 1s a summation of th~ fragment ion intensities for which a match is foun[r] ... Voir le document complet
361
RedOak: a reference-free and alignment-free structure for indexing a collection of similar genomes
... New methods have emerged for both the storage and analysis of pan-genomes. These methods usually use the same approach, which consists of storing a reference sequence and information on each genome variation compared to ... Voir le document complet
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