[PDF] Top 20 Analysis of Protein Disorder Predictions in the Light of a Protein Structural Alphabet
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Analysis of Protein Disorder Predictions in the Light of a Protein Structural Alphabet
... Keywords: protein structures; intrinsic disorder proteins; intrinsic disorder regions; X-ray structures; nuclear magnetic resonance; molecular dynamics; protein blocks; protein ... Voir le document complet
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Species specific amino acid sequence - Protein local structure relationships: An analysis in the light of a structural alphabet
... from the other species, and also from the expected view of AAS-PS (NR, see Supplementary material ...5). The last remark is promising indeed. The extensive genetic diversity of ... Voir le document complet
37
Species specific amino acid sequence-protein local structure relationships: An analysis in the light of a structural alphabet.: species‟ sequence - structure relationship
... 3.4. Protein Block contents in terms of species The 16-state description of local structures in terms of Protein Blocks (PBs) is expected to highlight finer ... Voir le document complet
36
Protein structure analysis, prediction and flexibility in the light of a structural alphabet
... alignment of homologous proteins: Adopting sequence comparison ...multiple protein structure alignment method based on a structural ... Voir le document complet
92
Global analysis of VHHs framework regions with a structural alphabet: VHH FRs structures
... percentage of residues predicted in their right state (α-helix, β-strand or ...coil). Protein Blocks description. Protein Blocks (PBs [40]) correspond to a set of 16 local ... Voir le document complet
31
Structural deformation upon protein-protein interaction: A structural alphabet approach
... by structural letter substitu- tions. For example, fragment 64–69 of the R chain of the ligand part of complex 1WQ1 is encoded by QFO in the unbound form and FFE ... Voir le document complet
19
Preparation and characterization of bacterial protein complexes for structural analysis
... ERSPECTIVES The expression, purification, and crystallization of protein complexes pose challenging problems, both technically and ...expand the list of tractable bacterial ... Voir le document complet
44
Use of a structural alphabet for analysis of short loops connecting repetitive structures.
... (f) Protein Blocks. In the last case to simplify the representation, helices are associated to PB m and strands to PB ...d. The visualization is done with RASTER 3D [42,43] and ... Voir le document complet
14
Structural Determinants Underlying Photoprotection in the Photoactive Orange Carotenoid Protein of Cyanobacteria
... From the ‡ Commissariat a ` l’Energie Atomique, Institut de Biologie et Technologies de Saclay, and § CNRS, URA 2906, 91191 Gif sur Yvette, France, the ¶ Joint Genome Institute, United States ... Voir le document complet
14
The role of structural pleiotropy in the retention of protein complexes after gene duplication
... influences the assembly of ...into the variety of ways in which the function of protein complexes can evolve following paralog ...that a pair of ... Voir le document complet
89
Algorithms for the analysis of protein interaction networks
... Given the inputs, we search for the simplest arrangement of nodes in a directed graph, such that (1) the nodes correspond to proteins, (2) the directed edges correspond [r] ... Voir le document complet
117
Insights into Hox protein function from a large scale combinatorial analysis of protein domains.
... and a predominant role for the UA domain The complete set of quantitative data was analyzed using a hierarchical clustering method (Figure 8; see Materials and ...that the forces ... Voir le document complet
15
Finding Occurrences of Protein Complexes in Protein-Protein Interaction Graphs
... complexity analysis in computational biology, Computer Applications in the Biosciences 11 (1995), ...matching in protein-protein interaction graphs, ...Fundamentals ... Voir le document complet
25
Multiple interests in structural models of DARC transmembrane protein.
... DARC a été particulièrement étudié comme un acteur majeur de l'infection par Plasmodium ...modèle structural de DARC, pour comprendre plus précisément sa capacité à lier son ligand physiologique CXCL8 et ... Voir le document complet
39
Protein enriched pasta : impact of protein network structure on the in-vitro protein digestibility
... Pasta, a traditional and highly popular cereal-based food, is produced with durum wheat ...(db) of proteins, but is deficient in some amino acids. Protein enriched (17%) pasta with better ... Voir le document complet
3
MoBiFC: development of a modular bimolecular fluorescence complementation toolkit for the analysis of chloroplast protein-protein interactions
... Introduction The characterisation of protein protein interactions (PPIs) is important for understanding the assembly of macromolecular machines and deciphering the signal ... Voir le document complet
32
DroPNet: a web portal for integrated analysis of Drosophila protein-protein interaction networks
... Initially, the user has to provide one or two lists of genes for generating the network (Figure ...1a). The major advan- tage of considering two lists is to allow the user to ... Voir le document complet
7
A photoactive carotenoid protein acting as light intensity sensor
... Purification of the Orange Carotenoid Protein. In this study, we used OCP isolated from the K m -resistant and Sp-resistant His-tagged OCP ...) in 0.1-M Tris 䡠HCl pH ⫽ 8 buffer ... Voir le document complet
7
A comprehensive analysis of the protein-ligand interactions in crystal structures of Mycobacterium tuberculosis EthR
... values in the range -2 to 0 [58] ) (Figure 2). The putative entrance of the 5 cavity located at the top of LBD is lined by Ala 91 , Pro 94 , Ala 95 , Asp 96 , Thr 97 , Gln ... Voir le document complet
43
Analysis of the role of structural disorder on the inertial correction to Darcy’s Law
... for a given porosity with a pressure gradient aligned with the principal axes of the ...Weak structural disorder is obtained as a result of random placement ... Voir le document complet
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