Regulatory network
Artificial Gene Regulatory Network and Spatial Computation: A Case Study
... the regulatory network dynamics in a biological point of ...artificial regulatory networks, which could be usefull if we want to use effectively the computational abil- ities of these ...a ...
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A dynamic genetic-hormonal regulatory network model explains multiple cellular behaviors of the root apical meristem of Arabidopsis thaliana
... gene regulatory network that underlies cell- fate specification and patterning at the root stem cell niche was proposed ...such network with both the auxin and cytokinin hormone signal- ing pathways ...
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Evolutionary tinkering with conserved components of a transcriptional regulatory network
... transcriptional regulatory networks remains largely ...transcriptional regulatory network governing the ribosomal expression program of two related yeast species has been massively reshaped in cis ...
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Bridging physiological and evolutionary time-scales in a gene regulatory network.
... final regulatory network between the 145 genes shown to be co-expressed during drought stress, we studied their regulation after several hormonal ...whose regulatory pathways are very ...revealed ...
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A direct role for murine Cdx proteins in the trunk neural crest gene regulatory network
... gene regulatory network (GRN) (Simoes-Costa and Bronner, 2015; Stuhlmiller and García-Castro, ...This network notably involves the convergence of posteriorizing (canonical Wnt and FGF) and ...
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SCENIC: single-cell regulatory network inference and clustering
... GRNboost GRNboost is based on the same concept as GENIE3: inferring regulators for each target gene purely from the gene expression matrix. However, it does so using the gradient boosting machines (GBM) 72 implementation ...
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Learning a Markov Logic network for supervised gene regulatory network inference
... Logic network, ...gene regulatory network involved in the switch proliferation/differentiation of keratinocyte cells, a set of experimental transcriptomic data and various descriptions of genes all ...
15
Gene regulated car driving: using a gene regulatory network to drive a virtual car
... gene regulatory networks: stable, chaotic and ...gene regulatory network heavily inspired from biology [ 3 ...the regulatory elements are coded upstream to the promotor by two integers, one ...
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Diversity and Plasticity of Th Cell Types Predicted from Regulatory Network Modelling.
... our regulatory network encompasses too many components to enable a direct analysis of the full state transition graph, we have applied the reduction method described in Section ‘‘Model ...a ...
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Inference of the Arabidopsis lateral root gene regulatory network suggests a bifurcation mechanism that defines primordia flanking and central zones
... LR regulatory network largely remains to be ...gene regulatory network (GRN) controlling LR primordium initiation and patterning in Arabidopsis from a time-series transcriptomic data ...
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Gene Regulatory Network Evolution Through Augmenting Topologies
... A. Our Model Our GRN model describes an interaction network of abstract proteins. We have based our regulatory network on Cussat-Blanc et al.’s [5] version of Banzhaf’s GRN model [27]. The Banzhaf ...
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Gene Regulatory Network Evolution Through Augmenting Topologies
... A. Our Model Our GRN model describes an interaction network of abstract proteins. We have based our regulatory network on Cussat-Blanc et al.’s [5] version of Banzhaf’s GRN model [27]. The Banzhaf ...
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General architecture of a genetic regulatory network. Applications to embryologic control
... Genetic network ruling the gastrulation The gastrulation is a dynamical process occurring at the end of the blastula ...genetic regulatory network has been proposed in (Leptin, ...This network ...
9
RulNet: A Web-Oriented Platform for Regulatory Network Inference, Application to Wheat –Omics Data
... of regulatory networks from quali- tative and quantitative –omics data by means of rule ...infer regulatory networks involved in the response to nitro- gen and sulfur supply in wheat (Triticum aestivum ...
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Activation of a Metabolic Gene Regulatory Network Downstream of mTOR Complex 1
... In addition to enhancing the de novo synthesis of lipids through SREBP-dependent induction of the relevant enzymes, our studies demonstrate that mTORC1 activity is sufficient to increase metabolic flux through both ...
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A computational framework for gene regulatory network inference that combines multiple methods and datasets.
... The other network hubs are also known important signalling factors. ERBB2 is a gene that encode for a member of the epidermal growth factor (EGF) receptor family of receptor tyrosine kinases. This protein has no ...
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en fr Gene regulatory network inference from dynamic multi-scale data Inférence de réseaux de régulation de gènes à partir de données dynamiques multi-échelles
... not be seen as a set of time series, but rather snapshots, i.e. independent samples from a time series of distributions. On the other hand, single-cell data give the opportu- nity of moving one step further toward a ...
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OSD1 promotes meiotic progression via APC/C inhibition and forms a regulatory network with TDM and CYCA1;2/TAM
... three key transitions of meiosis (prophase-meiosis I, meiosis I- meiosis II and meiosis II-exit) : (i) OSD1 and CYCA1;2/TAM act in a synergetic manner to promote the transition from prophase to meiosis I, as the double ...
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Inducing chaos in a gene regulatory network by coupling an oscillating dynamics with a hysteresis-type one.
... biological regulatory systems, two main topics in systems and synthetic biology, where identification and characterization of regu- latory units with prescribed dynamical features are essential (see [30] and ...
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CregNET: Meta-Analysis of Chlamydomonas reinhardtii Gene Regulatory Network
... gene regulatory networks (GRNs) ? The genome encodes thousands of genes whose products enable cell survival and various cellular functions (Karlebach and Shamir, 2008 ...numerous regulatory mechanisms. In ...
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