protein sequence
Novel metrics for feature extraction stability in protein sequence classication
... in protein sequence classication Rabie Saidi ∗†‡ Sabeur Aridhi ∗†‡ Mondher Maddouri ‡ Engelbert Mephu Nguifo ∗† Abstract Feature extraction is an unavoidable task, especially in the critical step of ...
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A simple derivation of the distribution of pairwise local protein sequence alignment scores
... Keyword: conservation function, reliability theory, Karlin-Altshul theorem Introduction Almost all sequence alignments methods compute a score s(a,b) between two compared sequences a and b. This score is a measure ...
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SNP calling from RNA-seq data without a reference genome: identification, quantification, differential analysis and impact on the protein sequence
... Received December 22, 2015; Revised July 05, 2016; Accepted July 11, 2016 ABSTRACT SNPs (Single Nucleotide Polymorphisms) are ge- netic markers whose precise identification is a pre- requisite for association studies. ...
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Community transcriptomics reveals universal patterns of protein sequence conservation in natural microbial communities
... environmental sequence sets, if these sequences appear multiple times, they are more likely to be identical, or nearly so, because they come from a single taxon popula- tion and therefore cluster only with ...
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Protein sequence comparison of human and non-human primate tooth proteomes
... the protein counts in each category (blood/wound-healing, extracellular matrix/ossification, immune response and others the rest of the less represented GO terms) to the total protein counts in the Top 20 ...
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Species specific amino acid sequence - Protein local structure relationships: An analysis in the light of a structural alphabet
... of protein structure like secondary structures (Jones, 1999; Madera et ...2002), protein disorder (Madera et ...2010), protein flexibility (Bornot et ...2008). Protein structure analyses and ...
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Species specific amino acid sequence-protein local structure relationships: An analysis in the light of a structural alphabet.: species‟ sequence - structure relationship
... of protein structure like secondary structures (Jones, 1999; Madera et ...2002), protein disorder (Madera et ...2010), protein flexibility (Bornot et ...2008). Protein structure analyses and ...
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Numerical Encodings of Amino Acids in Multivariate Gaussian Modeling of Protein Multiple Sequence Alignments
... a protein sequence, amino acids are usually pictured either with a one-letter code, or a three-letter ...a protein sequence, should those numerical values represent physico-chemical, or other ...
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The Consensus Coding Sequence (Ccds) Project: Identifying a Common Protein-Coding Gene Set for the Human and Mouse Genomes
... putative protein-coding gene annotation does not necessarily indicate that annotation is of poor quality; it indicates only that annotation is not yet consistent and requires additional ...is ...
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Mark my Word: A Sequence-to-Sequence Approach to Definition Modeling
... architecture. Sequence-to-sequence de- coders typically employ an attention to the input source (Bahdanau et ...input sequence based on a similarity between the current state of the decoder (the ...
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Pervasive Attention: 2D Convolutional Neural Networks for Sequence-to-Sequence Prediction
... 1 firstname.lastname@univ-grenoble-alpes.fr 2 firstname.lastname@inria.fr Abstract Current state-of-the-art machine translation systems are based on encoder-decoder archi- tectures, that first encode the input ...
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Sequence-to-Sequence Predictive models: from Prosody to Communicative Gestures
... standard sequence-to-sequence model where there are only encoder and de- coder, the recurrent neural network with attention mechanism has an attention map between the encoder and the ...
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Variational Sequence Labeling
... Matlab code corresponding to these results will be pro- vided on our website. 5. CONCLUSION In this paper, we proposed a novel method for combining several sequence labeling methods which allows us to inte- grate ...
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Compression in Sequence to Sequence Learning for Natural Language Processing
... output sequence at a ...original sequence into a sequence of the same length that the decoder then uses to decode an output sequence in the target ...
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Finding Occurrences of Protein Complexes in Protein-Protein Interaction Graphs
... each protein (vertex) of the complex, and each such protein can only be mapped by the homomorphism to a protein occurring in its ...of protein-protein interaction graphs, we need to ...
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sequence 3eme factoriser une expression
... Les expressions B, D, E, H, J et G peuvent être développées, pour souvenirs, vous pouvez regarder le chapitre NC2 développer une expression.. Pour les deux nombres choisis, le résultat [r] ...
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Protein-Protein Interaction in Purple Membrane
... for protein-protein interactions in purple ...between protein trimers was determined from the acoustic phonon branches to k ¼ 53 ...to protein function, protein dynamics of activated ...
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What is ... an automatic sequence?
... . which happens to consist of prefixes of the Thue–Morse sequence. In the limit, we obtain the Thue–Morse sequence itself, which is a fixed point of this morphism. Indeed, any morphism on a finite alphabet, ...
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A Sequence-Filter Joint Optimization
... However, all these algorithms are cyclic, meaning that the optimisation is never performed on both sequences at the same time. Hence, this article deals with a joint design of a sequence and its associated ...
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sequence 6eme longueur dun cercle
... Arnaud Pousset REP+ André Malraux Monterau-Fault-Yonne Travail pour le vendredi 27/03 :.. A faire dans le cahier partie exercices :.[r] ...
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