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SNP calling from RNA-seq data without a reference genome: identification, quantification, differential analysis and impact on the protein sequence

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Academic year: 2021

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Figure

Figure 1. With fasta / fastq input from an RNA-seq experiment, SNPs are found by K IS S PLICE without using a reference
Figure 2. (A) A SNP present in two alleles in the data. (B) The de Bruijn Graph derived from the data
Figure 3. Sequencing errors and rare variants generate bubbles in DBGs with very unbalanced path coverage
Figure 5. Precision and recall of K IS S PLICE , G ATK - GENOME , MP-transcriptome and MP- LONG - TRANS as a function of the expression level of the locus.
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