Association mapping
The genetic architecture of genome-wide recombination rate variation in allopolyploid wheat revealed by nested association mapping
... genetic mapping, and reducing the negative effects of linkage drag and deleterious genetic load in ...nested association mapping (NAM) population of 2,100 recombinant inbred lines created by crossing ...
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Construction of core collections suitable for association mapping to optimize use of mediterranean olive ([i]Olea europaea L.[/i]) genetic resources
... Abstract Phenotypic characterisation of germplasm collections is a decisive step towards association mapping analyses, but it is particularly expensive and tedious for woody perennial plant species. ...
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Association Mapping between Candidate Gene SNP and Production and Oil Quality Traits in Interspecific Oil Palm Hybrids
... performed association studies between candidate gene (CG) single nucleotide polymorphisms (SNP) and six production and 19 oil quality traits in 198 accessions of interspecific oil palm hybrids from five different ...
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Genome-wide association mapping of three agronomic traits and resistance to Parastagonospora nodorum in spring and winter wheat
... Genome-wide association mapping of three agronomic traits and resistance to Parastagonospora nodorum leaf blotch in spring and winter wheat Résumé : Le blé tendre (Triticum aestivum, allohexaploïde ...
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Genome-wide association mapping of loci involved in Potato virus Y resistance and tolerance in pepper germplasm
... Genome-wide association mapping of loci involved in Potato virus Y resistance and tolerance in pepper germplasm Tamisier L 1 , Nemouchi G 1 , Szadkowski M 1 , Lefebvre V 1 , Szadkowski E 1 , Girardot G 2 , ...
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Genome-wide association mapping for roottraits in a panel of rice accessions fromVietnam
... Results: The panel of 180 rice varieties was phenotyped under greenhouse conditions for several root traits in an experimental design with 3 replicates. The phenotyping system consisted of long plastic bags that were ...
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Genome-wide association mapping of QTLs implied in potato virus Y population sizes in pepper: evidence for widespread resistance QTL pyramiding.
... The association mapping has revealed seven different SNPs in association with IF and/or VA (Table 3 and ...The association between the number of PVY IF and pvr2 alleles was more significant ...
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Association mapping for wood quality in Pinus pinaster Aquitaine breeding population
... Association mapping for wood quality in Pinus pinaster Aquitaine breeding population Camille Lepoittevin 1,2a , Pauline Garnier-Géré 1 , François Hubert 1 , Franck Salin 1 , Emmanuelle Eveno , Laurent ...
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Exploration de la cartographie par analyse d'association («Association Mapping») chez l'orge (Hordeum vulgare L.)
... In association mapping, a mixed linear model (MLM) is typically used to account for population structure and the relationship among the lines (kinship) in order to reduce the number of false positive ...
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Association mapping and haplotype analysis of a 3.1-Mb genomic region involved in Fusarium head blight resistance on wheat chromosome 3BS
... Haplotype Association Analysis Association mapping based on linkage disequilibrium (LD), representing next-generation plant genetics [44,45], has become a powerful tool for dissecting complex ...
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Phenotypic and genetic dissection of component traits for early vigour in rice using plant growth modelling, sugar content analyses and association mapping.
... The negative correlation between leaf size and number (LLL versus DR) can be interpreted as a trade-off between two traits that contribute to early vigour, because both increase the sink strenght for a finite assimilate ...
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Genetic architecture of a rice nested association mapping population
... joint mapping of traits across multiple NAM-RILs, greatly increasing the accuracy and pre- cision of QTL discovery, especially when combined with high-density geno- ...joint mapping and pooling test ...
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Association mapping for phenology and plant architecture in maize shows higher power for developmental traits compared with growth influenced traits
... MATERIALS AND METHODS Genetic material and genotyping We considered for this study the set of 375 lines previously described by Camus-Kulandaivelu et al. (2006). They were genotyped for 94 simple sequence repeat (SSR) ...
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Tolerance to mild salinity stress in japonica rice: A genome-wide association mapping study highlights calcium signaling and metabolism genes
... Statistical analyses Analysis of variance was conducted on the growth parameters using a mixed model with treat- ment and genotype as fixed effects, and replicate and tank as random effects. The significance of genotype, ...
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Association mapping of inflammatory bowel disease loci to single variant resolution.
... Genome-wide association studies have identified 200 inflammatory bowel disease-associated loci, but few have been conclusively resolved to specific functional ...genome-wide association studies into ...
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Genome-wide association mapping of leaf mass traits in a Vietnamese rice landrace panel
... Comparison of the QTLs identified in this study with those from previous reports To identify colocations of QTLs identified in this study with previously published QTLs related to morphophysiological traits derived from ...
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Association mapping of resistance to rice blast in upland field conditions
... improvement or cultivar registration programs) gives ac- cess to a greater number of alleles (Yu et al. 2006). Like- wise, having accumulated many more recombination events than bi-parental mapping populations, ...
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Genome-wide association mapping of loci implied in Potato virus Y resistance and tolerance in the pepper germplasm
... Lucie Tamisier, Ghislaine Nemouchi, Marion Szadkowski, Gregory Girardot, Renaud Duboscq, Sylvain Santoni, Sarah Gautier, Christopher Sauvage, Alain. Palloix, Judith Hirsch, et al[r] ...
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Comparing strategies for association mapping in samples with related individuals.
... corr and CC-QLS additionally benefits from linkage when present, which is not the case of the conditional corrected variance. The mean IBD distribution among affected sibs from the AI population presented in Table 4 (one ...
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Crime mapping and modelling
... For the purpose of generating a hotspot map of crime for a single study area, using data for a particular retrospective snapshot of previous incidents, the number of crime incidents a[r] ...
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