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I-GOST a phylogenomic tool for plant comparative genomics

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Plant & Animal Genomes XVI Conference

January 12-16, 2008

Town & Country Convention Center

San Diego, CA

P865 : Software

I-GOST A Phylogenomic Tool For Plant Comparative Genomics

Matthieu Conte

1

, Mathieu Rouard

2

, Gaetan Droc

1

, Christophe Périn

1

1 CIRAD, UMR PIA 1096, TA 40/03 Avenue Agropolis 34398 Montpellier Cedex 5, France 2 Bioversity International, Parc Scientifique Agropolis II 34398 Montpellier Cedex 5, France

I-GOST (Iterative GreenPhyl Orthologous Search Tool) is a fast and user friendly comparative genomic program using a phylogeny-based method to infer orthologs and paralogs in plants. This tools use precomputed phylogeny develops on Oryza sativa and Arabidopsis thaliana full genomes from GreenPhylDB (http://greenphyl.cirad.fr). I-GOST intends to provide a reliable tool for sequence annotation, gene functional analysis or candidate gene search for any plant

genome. I-GOST improves time processing performance by using pre calculated phylogenetic analyses available for more than 4000 of validated families from GreenPhylDB database. I-GOST gives clear phylogenetic scores, ranked by bootstrap confidence from a list of plant genes. I-GOST is a publicly accessible tool available on-line

(http://greenphyl.cines.fr/cgi-bin/i-gost.cgi)

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PAG-XVI (P865) I-GOST A Phylogenomic Tool For Plant Comparative Genomics

25/08/2008

http://www.intl-pag.org/16/abstracts/PAG16_P08b_865.html

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