Physical protein-protein interaction
A Phytophthora effector protein promotes symplastic cell-to-cell trafficking by physical interaction with plasmodesmata-localised callose synthases
... effector protein promotes symplastic cell-to-cell trafficking by physical interaction with plasmodesmata-localized callose synthases Authors: Iga Tomczynska, Michael Stumpe, Tu Giang Doan and Felix ...
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PprA Protein Is Involved in Chromosome Segregation via Its Physical and Functional Interaction with DNA Gyrase in Irradiated Deinococcus radiodurans Bacteria
... PprA protein, by its localization through the septum after completion of DNA repair (21, 50), might facili- tate, by its interaction with GyrA, relocalization of the DNA gyrase at the ...PprA-GyrA ...
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A Phytophthora effector protein promotes symplastic cell-to-cell trafficking by physical interaction with plasmodesmata-localised callose synthases
... PD have essential roles in plant defence against microbial pathogens. The best-known example is the systemic PD-medi- ated spread of viruses (Benitez-Alfonso et al., 2010). PD are important for nutritional sink–source ...
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Protein-Protein Interaction in Purple Membrane
... high protein concentration in biological membranes may lead to long-range protein-protein interactions, which were speculated some time ago [ 1 ...and physical prop- erties, such as ...
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DroPNet: a web portal for integrated analysis of Drosophila protein-protein interaction networks
... (Drosophila Protein Network) is a Drosophila-dedicated web portal for generating and analyzing protein–protein interaction (PPI) ...and physical interactions and reinforcing the ...
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Cell surface protein-protein interaction analysis with combined time-resolved FRET and snap-tag technologies: application to GPCR oligomerization
... expressing ST-GABA B1 and ST-GABA B2 after double labeling the cells with both BG-K and BG-d2. In that case, conditions were defined to make sure of the equivalent labeling of the snap-tags with either fluorophores. To ...
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Analysis of protein contacts into Protein Units.
... some protein domains are not sequential ...of Protein Peeling can be compared to protein domain assignment, ...a Protein Peeling based not only on C but taken into account other atoms could be ...
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Genome-wide identification, phylogenetic analysis, expression profiling, and protein-protein interaction properties of TOPLESS gene family members in tomato
... amino acid sequence conservation (<3.2% difference within Solanaceous sequences), while sequences were less conserved within the SlTPL6 orthology group (22.7% difference within Solanaceous sequences). The moderately ...
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Comparative Analysis of Protein -Protein Interface Methods
... Comparative Analysis of Protein - Protein Interface Methods A.G. de Brevern 1 and J. Esque 2 1 Laboratoire DSIMB, INSERM, U 1134, Univ Paris Diderot, Univ. Sorbonne Paris Cité, INTS, Laboratoire ...
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Structure-based algorithms for protein-protein interactions
... the protein at two distinct stages of minimization to re- duce the number of degrees of freedom: coarse-grained and full-atom ...the protein-protein complex being optimized is an ...
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Compacting local protein folds with a Hybrid Protein: Compacting local protein folds
... L’archive ouverte pluridisciplinaire HAL, est destinée au dépôt et à la diffusion de documents scientifiques de niveau recherche, publiés ou non, émanant des établissements d’enseignemen[r] ...
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Extreme multifunctional proteins identified from a human protein interaction network.
... As structural disorder can allow conformational changes, we used DISOPRED 16 to predict disordered residues and analysed both the percentage of disordered residues per protein (Fig. 2d) and the number of stretches ...
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Probing the dynamic properties of two sites simultaneously in a protein–protein interaction process: a SDSL-EPR study
... whereas for N TAIL S407C PP only 50% was achieved. For P XD K496C P/PP labeling yields ranged from 90 to 100 %. EPR spectroscopy EPR spectra were recorded at room temperature on an ELEXSYS E500II Bruker spectrometer ...
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An expanded protein-protein interaction network in Bacillus subtilis reveals a group of hubs: Exploration by an integrative approach
... (Supporting Information Table S3), and inter-array normalization was performed as described in Section 2. Within this data set, replicates for each condition were averaged to form a non-redundant data set containing 573 ...
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The current landscape of coronavirus-host protein-protein interactions
... unfolded protein responses as demonstrated for the ORF7 of TGEV [ 48 ], while others could help the virus to control host protein expression [ 49 ...
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Protein Peeling 2: a web server to convert protein structures into series of protein units.
... of protein structures. PP2 only uses the matrices of protein contact probabilities and cut the protein structures optimally using Matthews’s coefficient ...
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Large-scale prediction of protein-protein interactions from structures
... candidate protein pairs for further analysis by more computationally expensive ...predicting protein-protein interactions is complicated by multi- domain ...of protein domains ...
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Involvement of Surfactant Protein D in Ebola Virus Infection Enhancement via Glycoprotein Interaction
... this protein family have been shown to interact with the Ebola glycoprotein (GP) to modify its ...specific interaction involving ficolin-1, a member of the soluble defence collagens family, with EBOV GP ...
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Protein beta-turn assignments.: Protein beta-turn assignments
... Background: The description of protein structures in terms of secondary structures is widely used for analysis or prediction purposes. The secondary structures are classically described as composed of two ...
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Protein enriched pasta : impact of protein network structure on the in-vitro protein digestibility
... acids. Protein enriched (17%) pasta with better amino acid profile were produced using 35% faba bean flour or 5% egg white ...their protein network was studied from the macro to the supramolecular scales ...
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