genomic analysis
Cross Species Genomic Analysis Identifies a Mouse Model as Undifferentiated Pleomorphic Sarcoma/Malignant Fibrous Histiocytoma
... species genomic analysis to determine which human sarcoma subtype is represented by the LSL-Kras G12D ; Trp53 Flox/Flox mouse model of soft tissue ...this genomic analysis, the pattern of lung ...
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Genomic analysis reveals that Pseudomonas aeruginosa virulence is combinatorial
... invasion systems, iron uptake systems, or secretion systems (such as the type III and type IV systems) [1,2]. In these 'clas- sic' cases, the presence or absence of individual pathogenicity islands correlates directly ...
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Comparative Genomic Analysis of Acheta domesticus Densovirus Isolates from Different Outbreaks in Europe, North America, and Japan
... Received 15 July 2013 Accepted 22 July 2013 Published 15 August 2013 Citation Pham HT, Iwao H, Szelei J, Li Y, Liu K, Bergoin M, Tijssen P. 2013. Comparative genomic analysis of Acheta domesticus densovirus ...
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Genomic Analysis of the Necrotrophic Fungal Pathogens Sclerotinia sclerotiorum and Botrytis cinerea
... B. cinerea is heterogeneous for the presence of mobile intein elements. Inteins (internal proteins) are in-frame protein insertions embedded within other proteins, which are transcribed and translated with their host ...
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Pan-genomic analysis to redefine species and subspecies based on quantum discontinuous variation: the Klebsiella paradigm
... sequencing, genomic DNA was mechanically fragmented in Covaris microTubes to generate a fragment size distri- bution from 180 to 220 bp and purified through Ampure Beads (Agencourt, ...
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Genomic analysis of a Raoultella ornithinolytica strain causing prosthetic joint infection in an immunocompetent patient
... We compared the genome sequence of R. ornithinolytica strain Marseille-P1025 to those of other strains of this species found in public databases. As of August 30 th , 2016 13 R. ornithinolytica genomes were available in ...
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Comparative genomic analysis of Drechmeria coniospora reveals core and specific genetic requirements for fungal endoparisitism of nematodes
... Comparative analysis of protein domains To look in more detail at protein domains, we next compared the PFAM annotations [ 56 ] for the entire set of predicted ...
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Comparative genomic analysis of Leishmania (Viannia) peruviana and Leishmania (Viannia) braziliensis
... Results: We found 94,070 variants shared by both L. (V.) peruviana isolates (144,079 in PAB-4377 and 136,946 in LEM1537) against the L. (V.) braziliensis M2904 reference genome while only 26,853 variants separated both ...
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Post-genomic analysis of Streptococcus thermophilus and Lactobacillus delbruekii ssp. bulgaricus cooperative growth in milk
... 113 described above and, by hybridizing the labeled samples to the S. thermophilus microarrray, we verified that L. bulgaricus RNA did not cross-hybridize. 10 µg of total RNA were reverse-transcribed by random priming, ...
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Genomic analysis of carbon monoxide utilization and butanol production by clostridium carboxidivorans strain P7T
... Characterization of plasmid sequences Sequence data indicated the potential presence of a 19 Kbp plasmid in C. carboxidivorans strain P7 T due to the higher frequency of reads from a particular contig and its slightly ...
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Genomic analysis of B-lactam resistance mechanisms in « Streptococcus pneumoniae »
... Whole Genome Sequencing gDNAs were prepared from mid-log phase S. pneumoniae cultures using the Wizard Genomic DNA Purification kit (Promega) according to the manufacturer‟s instructions. The genomes of the ...
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Comparative Genomic Analysis of Human Fungal Pathogens Causing Paracoccidioidomycosis
... Metabolic analysis was conducted on Uncinocarpus reesii, a non- pathogenic soil dwelling fungus in the ...culture, genomic DNA was extracted by bead beating in phenol and the ITS region was amplified using ...
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Comparative Genomic Analysis Reveals Ecological Differentiation in the Genus Carnobacterium.
... These genomic changes were accompanied by a specialization to food matrices, particularly exemplified in dairy ...the genomic traits responsible for adaptation to multiple animal-associated habitats are not ...
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Genomic analysis of ant domatia-associated melanized fungi (Chaetothyriales, Ascomycota)
... Their genomic landscape was compared with 24 previously sequenced black yeasts of the chaetothyrialean families Herpotrichiellaceae, Cyphellophoraceae, and ...
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Comparative genomic analysis of Clubroot resistance in the Brassicaceae family
... Figure2: Structural genomic position of Arabidopsis and B. napus QTL. Lines show the B. napus genes underneath the QTLs that have an ortholog in Arabidopsis. Centromeres, gene density and ancestral genomic ...
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Improved sequence-based orthologs identification using genomic context information and their impact on pathway analysis in plants
... similar genomic context and are likely to have similar ...Second, genomic context conservation is used to provide further support for orthologs assignment and to help with the identification of missing ...
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Next generation haplotyping to decipher nuclear genomic interspecific admixture in Citrus species: analysis of chromosome 2
... Background World-wide production of citrus was 131 million tonnes in 2011 and 2012 [1]. The main citrus varietal groups are sweet oranges (52%), small citrus (21%), limes and lemons (12%), and grapefruits and pummelos ...
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Genomic signatures of clonality in the deep water kelp Laminaria rodriguezii Genomic signatures of clonality
... was generated from the positions of individuals within the transect. Mantel tests between spatial and genetic distances were significant (R = 0.40, P < 0.001) after 10 000 permutations. LRBM2P12, LRBM2P13, and ...
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Analysis of HER2 genomic binding in breast cancer cells identifies a global role in direct gene regulation
... purification analysis and STAT3 has previously been reported to localise with HER2 at the chromatin and may be a critical functional partner of the complex, playing a direct role in gene regulation [ 8 ...
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A systems biology network analysis of nutri(epi)genomic changes in endothelial cells exposed to epicatechin metabolites
... A systems biology network analysis of nutri(epi)genomic changes in endothelial cells exposed to epicatechin metabolites D. Milenkovic a, , W. Vanden Berghe c,d , C. Morand a , S. Claude a , A. van de Sandt ...
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