Rate matrices for analyzing large families of protein sequences

Other than identifying and correcting several important consequences of semi-supervised Laplacian regularization algorithms, the results of Chapter 3 point out that even though it

L’archive ouverte pluridisciplinaire HAL, est destinée au dépôt et à la diffusion de documents scientifiques de niveau recherche, publiés ou non, émanant des

The assignment is based on support vector machine classification of binary feature vectors denoting the presence or absence in the protein of highly conserved

Maximum Entropy modelling of a few protein families with pairwise interaction Potts models give values of σ ranging between 1.2 (when all amino acids present in the multiple

MRFalign showed better alignment precision and recall than HHalign and HMMER on a dataset of 60K non-redundant SCOP70 protein pairs with less than 40% identity with respect to

We cannot use the Gaussian copula model in the context of Importance Sampling or Markov chain Monte Carlo, since evaluation of q (µ,Σ) (y) is not possible.. This model can be

« ondelettes de forme constante », Jean Morlet apportait une solution technique prometteuse, comme le démontraient certains tests numériques très encourageants. En réalisant

Dans le second chapitre, on s’attachera à obtenir des inégalités de concentration qui reflètent le comportement de grandes déviations de diverses fonctionnelles spec- trales, comme