Short
Communication
Epidemiology
of
extended-spectrum
β-lactamase-producing
Enterobacteriaceae
among
healthcare
students,
at
the
Portuguese
Red
Cross
Health
School
of
Lisbon,
Portugal
Claudine
Fournier
a,
Marta
Aires
de
Sousa
b,c,
Begoña
Fuster
Escriva
a,
Leila
Sales
b,
Patrice
Nordmann
a,d,e,f,
Laurent
Poirel
a,d,e,*
a
MedicalandMolecularMicrobiologyUnit,FacultyofScienceandMedicine,UniversityofFribourg,Fribourg,Switzerland
b
EscolaSuperiordeSaúdedaCruzVermelhaPortuguesa(ESSCVP),Lisbon,Portugal
cLaboratoryofMolecularGenetics,InstitutodeTecnologiaQuimicaeBiológica(ITQB)AntónioXavier,UniversidadeNovadeLisboa(UNL),Oeiras,Portugal d
INSERMEuropeanUnit(IAME,France),UniversityofFribourg,Fribourg,Switzerland
e
SwissNationalReferenceCenterforEmergingAntibioticResistance(NARA),UniversityofFribourg,Fribourg,Switzerland
f
InstituteforMicrobiology,UniversityofLausanneandUniversityHospitalCentre,Lausanne,Switzerland
ARTICLE INFO Articlehistory: Received6April2020
Receivedinrevisedform18June2020 Accepted1July2020
Availableonline11July2020 Keywords: Portugal ESBL Enterobacteriaceae Carriage Healtcareworkers ABSTRACT
Objective:Theaimofthepresentstudywastoprospectivelyevaluatetheprevalenceofintestinalcarriageby
extended-spectrum β-lactamase (ESBL)-producing Enterobacteriaceae among Portuguese students
attendingaBachelors’courseinhealthcare,andtodeterminethemolecularfeaturesofESBL-producing
isolates.
Methods:One-hundredandelevenfaecalsamplesrecoveredfromPortuguesehealthcarestudentswere
screenedforeitherESBL-producing,carbapenem-resistant,colistin-resistantor
pan-aminoglycoside-resistantEnterobacteriaceae,usingrespectivescreeningmedia.Allrecoveredisolatesweretestedfor
antimicrobialsusceptibilityandcharacterisedbypulsed-fieldgelelectrophoresis(PFGE)andmultilocus
sequencetyping(MLST).
Results: Atotalof 17ESBL-producingEnterobacteriaceae (16Escherichia coli andasingle Klebsiella
pneumoniae)wererecoveredfrom16students,representingaprevalenceof14.5%.TheE.coliisolateswere
distributedintothreesequencetypes(STs)andsevenPFGEtypes.ThemostcommonESBLidentifiedwas
CTX-M-1(n=13;76%),followedbyCTX-M-15(n=3;18%)andCTX-M-8(n=1;6%).Themajorityofthe
strainswereresistanttosulfonamides(88%)andfosfomycin(71%).Resistancetoaminoglycosideswas
observedatalowrate,thatis12%forbothtobramycinandkanamycin.Nocolistin-,carbapenem-or
pan-aminoglycoside-resistantisolateswererecovered.Amajorclone,ST10-blaCTX-M-1,included12E.coli
isolates.TheblaCTX-M-1genewasalwayslocatedonanIncFIA/FIBplasmidtype,co-harbouringgenes
encodingresistancetotetracycline,sulfonamides,trimethoprim–sulfamethoxazoleandfosfomycin.
Conclusion:ThemostcommonlyidentifiedESBLgeneinE.coliwasblaCTX-M-1,usuallyidentifiedamong
ESBL-producingisolatesrecoveredfromanimals.AhighprevalenceoffaecalcarriageofESBL-producingE.
coliwasfoundamonghealthyhealthcarestudents,underlyingthispopulationasanimportantreservoir.
©2020TheAuthor(s).PublishedbyElsevierLtdonbehalfofInternationalSocietyforAntimicrobial
Chemotherapy.This is an open access article underthe CCBYlicense (http://creativecommons.org/licenses/
by/4.0/).
1.Introduction
Thespreadofextended-spectrumβ-lactamase(ESBL) produc-ing Enterobacteriaceae has been considered as a global threat worldwideforthelast20years[1].ESBLsconferresistancetomost
β-lactam antibiotics, including penicillins and broad-spectrum cephalosporins, with only carbapenems being spared by those enzymes[2].
ESBL-producingEscherichiacoliareamajorcauseofcommunity andnosocomialacquiredinfections[3],whereasESBL-producing Klebsiellapneumoniaearemainlyhospital-acquiredpathogens[4]. Whereasuptothe1990s,ESBLsweremainlyencodedbytheblaTEM
and blaSHV genes, currently the most prevalent ESBL enzymes
recoveredfromhumansbelongtotheCTX-Mfamily,with CTX-M-15beingthemostfrequentESBLdeterminantidentifiedworldwide [5–7].
* Correspondingauthorat:MedicalandMolecularMicrobiologyUnit, Depart-mentofMedicine,FacultyofScience,UniversityofFribourg,CheminduMusée18, CH-1700Fribourg,Switzerland.
E-mailaddress:laurent.poirel@unifr.ch(L.Poirel). http://dx.doi.org/10.1016/j.jgar.2020.07.004
2213-7165/©2020TheAuthor(s).PublishedbyElsevierLtdonbehalfofInternationalSocietyforAntimicrobialChemotherapy.ThisisanopenaccessarticleundertheCCBY license(http://creativecommons.org/licenses/by/4.0/).
ContentslistsavailableatScienceDirect
Journal
of
Global
Antimicrobial
Resistance
In Portugal, theproportion of ESBL-producing E.coli and K. pneumoniaeisolatescausinginvasiveinfectionswasestimatedin 2017at15.7%and44.9%,respectively[8].Althoughseveralstudies onESBL-producingEnterobacteriaceaehavebeendoneinPortugal, most have only focussed on clinical isolates (recovered from hospitalsornursinghomes).Theseactuallyshowed,similarlyto manyplaces worldwide,a predominanceof CTX-M-15and the occurrence of CTX-M-1 at a low rate [3,9–12]. A single study performedmorethan10yearsagoevaluatedthecarriageofESBL producersinthecommunity.TheprevalenceofESBL-producingE. coliamong healthychildren was 2.7% (threeisolates producing CTX-M-1, TEM-52and SHV-12only, respectively) [13]. Another studyconductedin2014amonghealthyadultsidentifiedfourE. coli ESBL-positive isolates, producing CTX-M-14 and CTX-M-27 [14]. However, no study had been designed to prospectively evaluatetheprevalenceofthecarriageofESBLproducersinthe community.
The aim ofthe presentstudy wastoprospectivelyevaluate theprevalence of intestinal carriage by ESBL-producing Enter-obacteriaceae as well as other multidrug-resistant isolates amonga group of Portuguese students attending a Bachelors’ courseinhealthcare,andtodeterminetheepidemiologicaland antimicrobial resistance features of those ESBL-producing iso-lates.
2.Methods 2.1.Sampling
BetweenMarchandMay2018,111rectalswabswerecollected from111studentsatEscolaSuperiordeSaúdedaCruzVermelha Portuguesa(ESSCVP)inLisbon,Portugal.Studentswereattending eitherthefirst,second,third orfourthyearoftheirdegrees.Of note, half of the students (n=55) degrees included a clinical internship, and subsequently had contact withhospitals, long-termcarefacilitiesorcommunitypatients.
Thestudywasexplainedorallyintheclassroomandasterile swabwithtransportmediumandaquestionnaireweredistributed toallthestudents.Thequestionnairesincludeddemographicdata, andriskfactorsforcolonisationwithmultidrug-resistantbacteria suchashospitalisationduringthelast6months,antibiotherapyat thetimeofsamplingorduringtheprevious2months,attendance attheclinicalinternship,contactwithisolationpatients,contact withanimalsandtravellingabroad.Allindividualswhoaccepted toparticipatereturnedtherectalswabsampleandthecompleted questionnaire. The protocol was approved by the Direction of ESSCVPandawritteninformedconsentwasobtainedfromeach participant(allwereagedover18years).
2.2.Bacterialisolates
Rectal swabswere enrichedovernight in 5mL Luria–Bertani (LB)broth.Tenmicrolitresofeachsamplewereplatedontofive differentselectivemedia:ChromIDESBL1(bioMérieux,
Balme-La-Grotte, France), SuperPolymyxin, SuperAminoglycoside, Super-Carba and CarbaSmart1 (bioMérieux) in order to respectively selectforESBLproducers,colistin-resistant, pan-aminoglycoside-resistant and carbapenem-resistantEnterobacteriaceae. Species identification was performed onall selected isolates using the API20Esystem(bioMérieux).
2.3.Susceptibilitytesting
Antimicrobialsusceptibilitytestingwas performedusingthe discdiffusion methodon Mueller–Hinton agar plates (Bio-Rad,
Cressier,Switzerland)foramoxicillin,amoxicillin/clavulanicacid, piperacillin, piperacillin/tazobactam, ticarcillin, ticarcillin/clavu-lanic acid, temocillin, cephalotin, ceftazidime,cefotaxime, cefe-pime, cefoxitin,aztreonam, ertapenem, imipenem, meropenem, amikacin, gentamicin, tobramycin, kanamycin, fosfomycin, nali-dixicacid, chloramphenicol,tetracycline, colistin,sulfonamides, trimethoprim–sulfamethoxazole(SXT),ciprofloxacinand tigecy-cline,followingEuropeanCommitteeonAntimicrobial Suscepti-bility Testing (EUCAST) guidelines. Colistin resistance was evaluatedbybrothmicrodilutionaccordingtoEUCAST.Identi fica-tionofESBLproducerswasconfirmedwiththeRapidESBLNPtest [15].
2.4.Molecularcharacterisation
Identification of ESBL encoding genes was performed by polymerase chain reaction (PCR), as previously described [16], followed bysequencingof theamplicons (Microsynth,Balgach, Switzerland).
Theclonalrelationshipoftheisolateswasevaluatedby pulsed-field gel electrophoresis (PFGE) [17], and multilocus sequence typing (MLST), as previously described [18,19]. Sequence types (STs)wereassignedusingtheMLSTdatabasesforK.pneumoniae andE.coli(https://cge.cbs.dtu.dk/services/MLST-2.0/).
2.5.Transformationexperimentsandplasmidcharacterisation Plasmids carrying blaCTX-M and blaTEM geneswere extracted
fromtheoriginalisolatesusingtheKiesermethod[20]followedby electrotransformation. Escherichia coli TOP10 was used as the recipient and transformants were selected on LB agar plates supplemented withcefotaxime (1
m
g/mL). PCR amplification of blaCTX-M and blaTEM genes was performed using the E. colitransformantsastemplatestofurtherassessthepresenceofthe expectedgene.Plasmidsizewasevaluatedfromthetransformants using the Kieser method followed by electrophoresis. An incompatibilitygroupof theplasmids was determinedby PCR-basedreplicontyping(PBRT)oneachtransformant[21]. 2.6.Statisticalanalysis
Riskfactorswereassessed usingSPSSsoftware,version 21.0 (IBMPortugal,Lisbon,Portugal).Theχ2andFishertestswereused
toidentifyvariablesassociatedwiththecarriageofESBLproducers andcolistin-resistantisolates(gender,age,schoolingyear, previ-ous hospital admission, current or previous antibiotherapy, attendance at the clinical internship, contact with isolation patients, contact with animals and travelling abroad). P-values of0.05wereconsideredstatisticallysignificant.
3.Results
3.1.Studypopulation
Amongthe111studentsscreened,85attendedtheBachelor'sin nursingand26werestudyingphysiotherapy.Theywere distrib-utedoverthe4yearsofschooling(Table1).Mostofthestudents werefemale(n=97;87%),andthemeanagewas25.7years.Onlya fewparticipants(n=3)hadbeenadmittedtoahospitalduringthe previous 6-monthperiod, and 11 (10%) wereunder current or previous(last6months)antibiotherapy.Halfofthestudentshad alreadyattendedtheclinicalinternship,and44%hadhadcontact withpatients.Regularcontactwithanimals(cat,dog,rabbit,sheep, goat)wasobservedfor17%oftheindividualsandtravellingabroad wasrecordedin30%.
3.2.PrevalenceofESBLproducersandriskfactors
Ofthe111samplescollectedfromthehealthcarestudents,17 ESBL-producingenterobacterialisolateswererecovered,ofwhich 16wereE.coliand onewas K.pneumoniae,correspondingtoa prevalence rate of 14.5%. Nocarbapenem-resistant, pan-amino-glycoside-resistantor colistin-resistantEnterobacteriaceae were isolated.
Amongthedifferentvariablesanalysed(Table1),attendingthe firstyearofschoolingofnursingorphysiotherapywassignificantly associated with intestinal carriage of ESBL producing Enter-obacteriaceae(P=0.009).
3.3.ESBLdeterminants
ThemostcommonlyidentifiedESBLamongE.coliwasCTX-M-1 (n=13, 76%),followed by CTX-M-15(n=2)and CTX-M-8 (n=1) (Table 2).The singleK.pneumoniae isolaterecovered produced CTX-M-15. This latter isolate, as well as the only CTX-M-15-producingE.coli,co-producedthenarrow-spectrumβ-lactamase, TEM-1.
PBRT analysis showed that the blaCTX-M-1 gene was either
located on IncFIA/FIB (n=11), IncFIC (n=1) and IncI1 (n=1) plasmidtypes,theblaCTX-M-8geneontheFIA/FIBplasmidtypeand
theblaCTX-M-15geneeitheronFIA/FIB,FICandPplasmidtypes.In
most cases (59%), plasmids carrying the blaCTX-M-1 gene
co-harboured genes encoding resistance to tetracycline, sulfona-mides,fosfomycinandSXT.
3.4.Susceptibilitytesting
Antimicrobialsusceptibilitytestingshowedthatamajorityof theESBL-producingisolateswereresistanttocefotaxime(94%), ceftazidime(94%), cefepime (100%), tetracycline (76%), sulfona-mides (88%), SXT (82%) and fosfomycin (71%). Resistance to
aminoglycosideswasobservedatalowrate,thatis12%forboth tobramycinand kanamycin.Allisolatesremainedsusceptibleto carbapenems,colistinandchloramphenicol.
3.5.Clonalrelationship
PFGEanalysisdistributedthe16ESBL-positiveE.coliisolates intosevenPFGE types(Fig.1)and threeSTs wereidentifiedby MLST(Table2),namelyST10(n=13),ST130(n=2)andST38(n=1). The unique ESBL-producing K. pneumoniae isolate belonged to ST348.
4.Discussion
The present study identified a prevalence of 15% ESBL-producing Enterobacteriaceaeamongthehealthcarestudents at a teaching university in Lisbon, Portugal. This rate may be consideredveryhigh,owingtothescreenedpopulation.Indeed, theseindividualswereforthemostpartyoung,healthypeople, whodidnotpresent(forthemajority)significantwell-established risk factors (travelling in endemic countries, hospitalisation, antibiotic selective pressure). This rate is twice as high when comparedwitharecentstudyperformedinSpain,aneighbouring country) which focussed on hospitalised patients screened at admission(7.7%),despitethefactthatthoseindividualspresented additionalriskfactors,beingunhealthyandolder(meanageof69 yearsold)[22].Thishighratemightbeinpartrelatedtothespread of asinglecloneamongthose students,possiblyresultingfrom cross-contaminations or contamination from a unique and unknownsource.Thisprevalenceratewasmuchlowerthanthat observedin Indiawith34%of thehealthypopulationattending hospitalforregularcheck-upsbeingcolonisedbyESBL-producing Enterobacteriaceae[23].
Overthe17ESBL-producingisolates,allbutonecorresponded toE.coli,withonlyasingleK.pneumoniaebeingidentified.
CTX-M-Table1
CharacteristicsofstudentsenrolledintheprospectivestudyandriskfactorsforintestinalcarriageofESBL-producingEnterobacteriaceae.
Nursing(n=85) Physiotherapy(n=26) Total(n=111) CarriageofESBLproducers P-value
Yes(n=17) No(n=94) Gender Male 13 1 14 3 11 0.422 Female 72 25 97(87%) 14(82%) 83(88%) Age(years) Mean 26.5 23.2 25.7 Schoolingyear First 40 7 47(42%) 14(82%) 33(35%) 0.009 Second 18 0 18(16%) 1(6%) 17(18%) Third 11 19 30(27%) 1(6%) 29(31%) Fourth 16 0 16(14%) 1(6%) 15(16%)
Previoushospitaladmission
Yes 2 1 3(3%) 0 3(3%) 0.455
No 83 25 108 17 91
Currentorpreviousantibiotherapy
Yes 9 2 11(10%) 2(12%) 9(10%) 0.781
No 76 24 100 15 85
Clinicalinternshipattendance
Yes 37 18 55(50%) 4(25%) 44(46%) 0.034
No 48 8 56 12 51
Contactwithisolatedpatients
Yes 45 4 49(44%) 4(25%) 45(47%) 0.096
No 40 22 62 12 50
Contactwithanimals
Yes 11 8 19(17%) 3(19%) 16(17%) 0.851
No 74 18 92 13 79
Travelabroad
Yes 23 10 33(30%) 3(19%) 30(32%) 0.299
No 62 16 78 13 65
1wasthemostcommonlyidentifiedESBL(76%)whereas CTX-M-15(18%)wasmuchlessprevalent.Thissituationissurprisingas what is observed in most European countries is actually the opposite, with CTX-M-15 producers over-predominating [24]. Conversely,CTX-M-1 producersarecommonlyobserved among animalsinmanyEuropeancountries,beingthemostcommonly identifiedESBLinmanydifferentfood-producinganimals(poultry, cattle,swine)[25–28].
Sequence typing identified three different STs among the recoveredE.coliisolates,namelyST10,ST131andST38.ThoseSTs arecommonlyidentifiedamonghumanisolates,withST10beinga commensallineagethatisalsooftenrecoveredfromanimals.By contrast,ST131ismainlyfoundinhumansandrelatedto extra-intestinalinfectionsbutalsoincarriageinhealthyindividuals[29]. AmongthetwostudentscolonisedwithanST131E.coli,there were different particularities that could be noted; one of the students colonised with the E. coli blaCTX-M-1-ST131 was a
vegetarian,hadtravelledinIndia,ItalyandIrelandduringthe 6-monthperiodpriortothestudy,wasattendingtheirsecondyearof schooling,andhadcontactwithhospitalisedpatientsduringtheir clinicalinternship.ThesecondindividualcolonisedwithanST131 E.coli(beingaCTX-M-8producer)wasafourth-yearstudentwho alsohadcontactwithpatients.
RegardingtheCTX-M-15-producingE.coliisolates,theywereof theST38type,whichisnotsurprisingconsideringthatthisclonal backgroundhasbeenreportedtobethesecondmostprevalentone producingCTX-M-15afterST131[30].TheCTX-M-15-producingK. pneumoniaewasanST348,anSTthatwasshowntobethesourceof urinarytractinfectionsinbothhumansandcompanionanimalsin Portugal[31].
The most commonly identified clone was ST10-blaCTX-M-1,
correspondingto12E.coliisolates.Surprisingly,11outofthose 12isolateswererecoveredfrom11studentsintheirfirstyearof study,withonlyasingleisolatefromastudentattendingthethird year.Thisresultwasverysurprising,asourprimaryhypotheses werethateithernodifferencewouldbeobservedamongallthe studentsduringallthestudentyears,oranincreasedESBLrate mightbeobservedalongtheyearsincaseadifferencewouldbe noticed.Thislatterhypothesiswouldhavecorrelatedwithsome previousstudiesshowingthathealthcareworkersincontactwith patientsbeingcolonisedwithESBLproducersareathigherriskof beingcolonisedwithESBLproducers[32].Heretheoppositewas observed, with most students in contact with patients (ESBL colonisationstatusunknown)beingnegativeforESBLproducers. Thereasonwhysuchahighproportionoffirst-yearstudentsare significantlycolonisedremainsintriguing.Suchahighproportion ofcolonisationwithESBLproducersmaybealsoidentifiedinthe generalandthehealthypopulationinPortugal.Itisimportantto highlight that those first-yearstudents werefor themost part colonisedwithasingleclone,belongingtoST10,whichisavery commonbackground,E.colibeingfoundnotonlyinhumans,but alsoinanimalsandinfood.Therefore,wemightspeculatethatthe sourceofcolonisationofstudentsbytheST10-blaCTX-M-1couldbe
food-related,consideringtheyactuallysharesomecommonmeals wheneatingattheuniversitycafeteria.
TheblaCTX-M-1geneofthismajorclonewaslocatedona56-kb
IncFIA/FIBplasmidthatco-harbouredgenesencodingresistanceto tetracycline, sulfonamides, SXT and fosfomycin. Besides the worldwide dissemination of E. coli CTX-M-1 in animals, an increasing prevalence of blaCTX-M-1-positive E. coli in human
communitieshaslatelybeendescribedinMediterraneancountries includingSpain(2%in2008[33])andPortugal(1%in2009[34]). Wemightthereforehypothesisethatatleastpartofwhatwehave shownisrepresentativeofwhatishappeninginthecommunity.Of note, data collected about antibiotic consumption among the subjectsstudied showed that littleantibioticselective pressure
Table2
GeneticandphenotypicfeaturesassociatedwiththeESBL-producingisolates.
Isolate Species ST Resistancedeterminants PFGE Plasmidincompatibility Plasmidsize(kb) Resistancephenotypetransformantsa
AA1 E.coli ST10 blaCTX-M-1 A1 IncFIA/FIB 56 TET,SUL,SXT,FOS
AA2 E.coli ST10 blaCTX-M-1 A1 IncFIA/FIB 56 TET,SUL,SXT,FOS
AA3 E.coli ST10 blaCTX-M-1 A1 IncFIA/FIB 56 TET,SUL,SXT,FOS
AA5 E.coli ST10 blaCTX-M-1 A1 IncFIA/FIB 56 TET,SUL,SXT,FOS
AA6 E.coli ST10 blaCTX-M-1 A1 IncFIA/FIB 56 TET,SUL,SXT,FOS
AA8 E.coli ST10 blaCTX-M-1 B IncFIA/FIB 84 TET,KMN,TMN,SUL,SXT,FOS
AA10 E.coli ST10 blaCTX-M-1 A1 IncFIA/FIB 56 TET,SUL,SXT,FOS
AA11 E.coli ST10 blaCTX-M-1 A1 IncFIA/FIB 56 TET,SUL,SXT,FOS
AA13 E.coli ST10 blaCTX-M-1 A1 IncFIA/FIB 56 TET,SUL,SXT,FOS
AB3 E.coli ST10 blaCTX-M-1 C IncI1 84 TET,SUL,SXT,FOS
AB14 E.coli ST10 blaCTX-M-1 A1 IncFIA/FIB 56 TET,SUL,SXT,FOS
BB8 E.coli ST131 blaCTX-M-1 D IncFIC 76 Noco-resistance
CA1 E.coli ST10 blaCTX-M-1 A1 IncFIA/FIB 56 TET,SUL,SXT,FOS
DA11 E.coli ST131 blaCTX-M-8 A2 IncFIA/FIB 56 SUL,SXT
AB13 E.coli ST10 blaCTX-M-15, blaTEM-1 E IncFIA/FIB 61 TET,KMN,TMN
KA1 E.coli ST38 blaCTX-M-15 F IncFIC 23 SUL,SXT
KA7 K.pneumoniae ST348 blaCTX-M-15, blaTEM-1 Kp IncP 319 SUL,FOS
ESBL,extended-spectrumβ-lactamase;PFGE,pulsed-fieldgelelectrophoresis;ST,sequencetype.
Underlinedtermsindicatethoseresistancedeterminantsbeingco-localizedtogetherwithESBLencodinggeneonasameplasmid.
aAntibioticabbreviations:FOS,fosfomycin;KMN,kanamycin;SUL,sulfamide;SXT,trimethoprim–sulfamethoxazole;TET,-tetracycline;TMN,tobramycin.
Fig.1.Pulsed-fieldgelelectrophoresisoftheESBL-positiveE.coliisolates.Sal, Salmonellabraenderupasmolecularsizestandard;AXX,first-yearnursestudent; BXX,second-yearnursestudent;CXX,third-yearnursestudent;DXX,fourth-year nursestudent;KA,first-yearphysiotherapystudent.
existedrulingoutsuchanexplanationforaputativecolonisation byresistantisolates.
In conclusion, our study revealed a very high rate of colonisation by ESBL-producing E. coli (15%) within a young healthypopulation.Asurprisingfindingwasthehighrateofthe detectionofCTX-M-1producersidentified,contrastingwiththe lowrateofCTX-M-15producersusuallyidentifiedamonghealthy populationsworldwide.
Funding
ThisworkhasbeenfundedbytheUniversityofFribourgandthe SwissNationalScienceFoundation(projectFNS-407240_177381). Itwas alsopartlysupportedbytheprojectPTDC/DTP-EPI/0842/ 2014fromFundaçãoparaaCiênciaeaTecnologia(FCT),Portugal. Competinginterests
Nonetodeclare. Ethicalapproval
Aconsentformwascompletedbyeachparticipant. References
[1]ZaharJR,LortholaryO,MartinC,PotelG,PlésiatP,NordmannP.Addressingthe challengeofextended-spectrumbeta-lactamases.CurrOpinInvestigDrug 2009;10:172–80.
[2]Bradford PA. Extended-spectrum beta-lactamases in the 21st century: characterization,epidemiology,anddetectionofthisimportantresistance threat.ClinMicrobiolRev2001;14(4):933–51.
[3]MendoçaN,LeitaoJ,ManageiroV,FerreiraE,CanicaM.Spreadof extended-spectrumβ-lactamaseCTX-M-producingEscherichiacoliclinicalisolatesin communityandnosocomialenvironmentsinPortugal.AntimicrobAgents Chemother2007;51:1946–55.
[4]PatersonDL,KoWC,VonGottbergA,MohapatraS,CasallasJM,GoossensH, et al. International prospective study of Klebsiella pneumoniae bacteria: implicationsofextended-spectrumβ-lactamaseproductioninnosocomial infections.AnnInternMed2004;140:26–32.
[5]CantónR,NovaisA,ValverdeA,MachadoE,PeixeL,BaqueroF,etal.Prevalence andspreadofextended-spectrumβ-lactamase-producingEnterobacteriaceae inEurope.ClinMicrobiolInfect2008;14:144–53.
[6]CantónR,González-AlbaJM,GalánJC.CTX-Menzymes:originanddiffusion. FrontMicrobiol2012;3:110.
[7]PeiranoG, PitoutJDD. Extended spectrum β-lactamase-producing Enter-obacteriaceae:updateonmolecularepidemiologyandtreatmentoptions.Drug 2019;79:1529–41.
[8]ECDC.Surveillance ofantimicrobial resistance in Europe.Solna Sweden: EuropeanCentreforDiseasePreventionandControl;2017.
[9]FernandesR,AmadorP,OliveiraC,PrudêncioC.Molecularcharacterizationof ESBL-producingEnterobacteriacaeinNorthernPortugal.SciWorldJ2014; ID782897.
[10]RodriguesC,MachadoE,FernandesS,PeixeL,NovaisA.DifferentEscherichia coli B2-ST131 clades (B and C) producing ESBL colonizing residents in Portuguesenursinghomes.EpidemiolInfect2017;145:3303–6.
[11]RodriguesC,MachadoE,PiresJ,RamosH,NovaisA,Peixe L.Increaseof widespreadA.B1andDEscherichiacoliclonesproducinghighdiversityof CTX-M-typesinaPortuguesehospital.FutureMicrobiol2015;10:1125–31. [12] GonçalvesD,CecìlioP,FerreiraH.Nursinghomesandlong-termcarefacilities:
reservoirs of CTX-M-15-producing Escherichia coli O25b-ST131. J Glob AntimicrobResist2016;7:69–71.
[13]GuimarãesB,BarretoA,RadhouaniH,FigueiredoN,GasparE,RodriguesJ,etal. Geneticdetectionofextendedβ-lactamase-containingEscherichiacoliisolates
andvancomycin-resistantEnterococciinfecalsamplesofhealthychildren. MicrobialDrugResist2009;15:211–6.
[14]RodriguesC,MachadoE,FernandesS,PeixeL,NovaisA.Anupdateonfecal carriage of ESBL-producing Enterobacteriaceae by Portuguese healthy humans:detectionoftheH30subcloneofB2-ST131Escherichiacoliproducing CTX-M-27.JAntimicrobChemother2016;71:1120–2.
[15]NordmannP,DortetL, PoirelL.Rapiddetectionofextended spectrum-β-lactamase-producingEnterobacteriaceae.JClinMicrobiol2012;50:3016–22. [16]PoirelL,DortetL,BernabeueS,NordmannP.GeneticfeaturesofblaNDM-1
positiveEnterobacteriacae.AntimicrobAgentsChemother2011;55:5403–7. [17]Kieffer N, Nordmann P, Aires-de-Sousa M, Poirel L. High prevalence of
carbapenemase-producingEnterobacteriaceaeamonghospitalizedchildrenin Luanda,Angola.AntimicrobAgentsChemother2006;60:6189–92. [18]WirthT,FalushD,LanR,CollesF,MensaP,WielerLH,etal.Sexandvirulencein
Escherichiacoli:anevolutionaryperspective.MolMicrobiol2006;60:1136–51. [19]DiancourtL,PassetV,VerhoefJ,GrimontPA,BrisseS.Multilocussequence typing of Klebsiella pneumoniae nosocomial isolates. J Clin Microbiol 2005;43:4178–82.
[20]KieserT.FactorsaffectingtheisolationofcccDNAfromStreptomyceslividans andEscherichiacoli.Plasmid1984;12:19–36.
[21]CaratolliA,BertiniA,VillaL,FalboV,HopkinsKL,ThrelfallEJ.Identificationof plasmidsbyPCR-basedreplicontyping.JMicrobiolMethods2005;63:219–28. [22]Díaz-AgeroPérezC,López-FresneñaN,RinconCarlavillaAL,HernandezGarcia M,Ruiz-GarbajosaP,Aranaz-AndrésJM,etal.Localprevalenceof extended-spectrum beta-lactamase (ESBL) producing Enterobacteriaceae intestinal carriersatadmissionandco-expressionofESBLandOXA-48carbapenemase inKlebsiellapneumoniae:aprevalencesurveyinaSpanishuniversityhospital. BMJOpen2019;9:e024879.
[23]BabuR,KarimS,WarrierS,NairSG,SinghSK,BiswasR.Faecalcarriagerateof extended-spectrumβ-lactamase-producingEnterobacteriaceaein hospital-isedpatientsandhealthyasymptomaticindividualscomingforhealth check-up.JGlobAntimicrobResist2016;6:150–3.
[24]RobinF,BeyrouthyR,BonacorsiS,AissaN,BretL,BrieuN,etal.Inventoryof extended-spectrum-β-lactamase-producingEnterobacteriaceaeinFranceas assessed byamulticenterstudy. AntimicrobAgentsChemother 2017;61: e01911–e1916.
[25]MachadoE,Coque TM,CantónR, SousaJC, PeixeL. Antibioticresistance integronsandextended-spectrumβ-lactamasesamong Enterobacteriaceae isolates recovered from chickens and swine in Portugal. J Antimicrob Chemother2008;62:296–302.
[26]Olsen RH,Bisgaard M,Löhren U, RobineauB, Christensen H. Extended-spectrum β-lactamase-producingEscherichia coli isolatedfrom poultry: a reviewofcurrentproblems,illustratedwithsomelaboratoryfindings.Avian Pathol2014;43:199–208.
[27]MüllerA,StephanR, Nüesch-InderbinenM.EscherichiacoliDistributionof virulencefactorsinESBLproducingisolatedfromtheenvironment,livestock, foodandhumans.SciTotalEnviron2016;541:667–72.
[28]RamosS,SilvaN,DiasD,SousaM,Capelo-MartinezJL,BritoF,Clonaldiversity ofESBL-producingEscherichiacoli inpigsatslaughterlevelinPortugal. 2013;10:74–9.
[29]Nicolas-Chanoine MH, Bertrand X, Madec JY. Escherichia coli ST131, an intriguingclonalgroup.ClinMicrobiolRev2014;27:543–74.
[30]CoqueTM,NovaisA,CarattoliA,PoirelL,PitoutJ,PeixeL,etal.Dissemination ofclonallyrelatedEscherichiacolistrainsexpressingextended-spectrum beta-lactamaseCTX-M-15.EmergingInfectDis2008;14:195–200.
[31]MarquesC,MenezesJ,BelaA,AboimC,Cavaco-SilvaP,TrigueiroG,etal. Klebsiellapneumoniaecausingurinarytractinfectionsincompanionanimals andhumans:populationstructure,antimicrobialresistanceandvirulence genes.JAntimicrobChemother2018;74:594–602.
[32]AdlerA,BaraniakA,IzdebskiR,FiettJ,SalviaA,SamsoJV,etal.Multinational studyofcolonizationwithextendedspectrumβ-lactamase-producing Enter-obacteriaceaeinhealthcarepersonnelandfamilymembersofcarrierpatients hospitalisedinrehabilitationcenters.ClinMicrobiolInfect2014;20:O516–23. [33]VinuéL,SáenzY,Martínez,SomaloS,MorenoMA,TorresC,etal.Prevalence anddiversity ofextended-spectrumβ-lactamaseinfaecalEscherichia coli isolatesfromhealthyhumansinSpain.ClinMicrobiolInfect2009;15:954–7. [34]OliveiraC,AmadorP,PrudêncioC,TomazCT,Tavares-RatadoP,FernandesR. ESBLandAmpCβ-lactamaseinclinicalstrainsofEscherichiacolifromSerrada Estrela,Portugal.Medicina2019;55:272.