Recent advances in plant cell wall proteomics.

Texte intégral

(1)Recent advances in plant cell wall proteomics. Elisabeth Jamet, Cécile Albenne, Georges Boudart, Muhammad Irshad, Hervé Canut, Rafael Pont-Lezica. To cite this version: Elisabeth Jamet, Cécile Albenne, Georges Boudart, Muhammad Irshad, Hervé Canut, et al.. Recent advances in plant cell wall proteomics.. Proteomics, Wiley-VCH Verlag, 2008, 8 (4), pp.893-908. �10.1002/pmic.200700938�. �hal-00261486�. HAL Id: hal-00261486 https://hal.archives-ouvertes.fr/hal-00261486 Submitted on 7 Mar 2008. HAL is a multi-disciplinary open access archive for the deposit and dissemination of scientific research documents, whether they are published or not. The documents may come from teaching and research institutions in France or abroad, or from public or private research centers.. L’archive ouverte pluridisciplinaire HAL, est destinée au dépôt et à la diffusion de documents scientifiques de niveau recherche, publiés ou non, émanant des établissements d’enseignement et de recherche français ou étrangers, des laboratoires publics ou privés..

(2) Published In: Proteomics 8, 893–908 (2008).

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(30)

(31) . .

(32) Gene accession number. Putative function. Neural Networkscore. Predicted non-classical secretory proteins At2g39050. Homologous to lectin (ricin-type). 0.903. At3g03060. Homologous to ATPase (AAA family). 0.843. At3g26060. Peroxiredoxin Q. 0.837. At1g67880. Glycosyl transferase family 17. 0.836. At2g43710. Homologous to fatty acid desaturase. 0.819. At1g43800. Homologous to fatty acid desaturase. 0.813. At3g02630. Homologous to fatty acid desaturase. 0.750. At1g72730. Homologous to RNA helicase. 0.746. At1g15390. Homologous to polypeptide deformylase. 0.729. At2g21170. Homologous to triose phosphate isomerase. 0.655. At3g52960. Homologous to peroxiredoxin. 0.648. At2g44350. Citrate synthase 4 (ATCS). 0.622. At4g36530. Homologous to hydrolase (alpha/beta fold family protein). 0.621. At3g16640. Homologous to translationally controlled tumor protein (TCTP). 0.608. Predicted intracellular proteins At2g38870. 0.584. At5g20080. Homologous to proteinase inhibitor Unknown function (oxido-reductase NAD- and FAD-binding domains). At1g72560. Homologous to yeast exportin (PSD1). 0.555. At2g17190. Ubiquitin family. 0.552. At3g15360. Thioredoxin M type 4 (ATHM4). 0.551. At2g36530. Homologous to enolase. 0.547. At4g30690. Homologous to translation initiation factor IF-3. 0.536. At5g42980 At4g17260 At3g16400 At5g49190 At1g03675 At2g01520 At3g15730 At3g14440 At3g04600 At3g04120 At5g38420 At1g56070. Thioredoxin H type 3 (ATTRX3) Homologous to lactate/malate dehydrogenase Homologous to jacalin (ATMLP-470) Glycosyl transferase family 1 Homologous to thioredoxin M Homologous to pathogenesis-related protein Bet v I Homologous to phospholipase D Homologous to carotenoid oxygenase Amino acid tRNA synthetase class I (W and Y) Glyceraldehyde-3-phosphate dehydrogenase C subunit (GAPC) RuBisCO small subunit 2B (ATS2B) Translation elongation factor (LOS1). 0.530 0.525 0.509 0.509 0.499 0.497 0.495 0.468 0.458 0.456 0.449 0.411. Ì. 0.576.

(33) At2g25630 At5g26710 At3g03060 At1g69290 At5g55990 At1g24360 At3g30810 At5g08740 At4g31180 At1g30580 At5g41550 At4g37870 At3g16420 At4g22410 At3g58480 At5g46550. Glycosyl hydrolase family 1 Amino acid tRNA synthetase class I (E and Q) Homologous to ATPase (AAA family) Unknown function (PPR repeats) Homologous to calcineurin B Homologous to dehydrogenase/reductase Unknown function (DUF1633) NAD(P)H dehydrogenase C1 Amino acid tRNA synthetase class II (D, K and N) Unknown function (GTPase domain, DUF933) Unknown function (TIR domain, LRR domains) Homologous to phospho enol pyruvate carboxykinase Homologous to jacalin (PBP1) Homologous to ubiquitin carboxyl-terminal hydrolase Unknown function (calmodulin-binding domain) Unknown function (bromodomain) (ARR1 (myb-like DNA-binding domain). 7%WI7DFT_fV SDkGa$_/aW%(%aNkÆSDH]aN(vW%(JDUTE<7I;SDW. At3g16857. 0.177. ¹ ¾N° j±?¾N¯fª ¹ ±Bº ¸ ·óùñ º 7 ´21iµõA5$.L)+)C14´$OQ1*ÁL1L)+){µI.L)+)î¶$M§Kd3p1K$\]*CAL,T*n,3+5$1hj*n´Q1^N1L,¼ALMj*²¶N3p*KN´ KNhÆ>Ðk ,3fMjZ2A43+Z$M1Y,Ö?_¦´{^~1?1i^$=¥\ K¥,3 KNh 3f5Q1ù3¦*n\]1L= ,£êQ,£3¦1L\].43p*A *C^~14´$3¦*nhf*+A.3p*nKB´ KNhÔ> Ðk,ø3+5$MjKNZ$OB5 ¶$M§K?3¦1K$\*Aõ,Õ3+Z$^2*1L,µI.B,Ô¶21Mh¦KÍMf\1L^ M§a~13fO~MjZ2.LAMj^¥3+Z$)C1LMj.L,¼),ÒAKN5$h#.¶2Mj.YK$AY,Õ3¦3¦1Lm-3-MjMj*n.iÄY´{.3+,¼*C)nK?.´3j*CK?KN´$h.B)%,\KN\]KN^N1*Chj>*CAd .3j*CklKN,Ô´2,*,:KNM´$K$*CŃµ'3f1iMP1i.Y\ÒA43j1L*CMfKBO2´$*,Ò´2O$µ#=#*²3¦O$5Ô*²eÍKN*´$3C52O 1M ´$1LAµ1B)C)g*µI´$,8.Y*C)-OB)g5ÍAi3 KN*\´Í3n¶2K KB´$>1Ń3p,4k Ö ,£3+MjZ$A3CZ2Mj1,Ö .Y0NZN7T´2\Ò^N.KN´$´$3[O ,k×*´$;Ai9[1 ,3+5QKN14h]ê > K$ÔAiAkÆZ$,8M =%5N^?ê2Z2^NMj*²M§´$K O NêÍ3+)²52.i3f1L*+*CK?M:´2, 3fMj.K$´2h,kl*Ø3 MK 3¦5$.LMKB´$Z$ÔN5O$)êQ1A´$K2^~,ÕKNêÍ¶2)².i)n3f.Y*+,£K?\]´Q,Ë*+A .LMjMj1 13+*+¶$A4M§Z¬K?)02Z$.\ 02)²ê .i´$3+^521 Jg\]K$K2)nOQ,P3* .Y¶N¶$.LMf.3+Z¬,4ÖY;G5$1D3fµXK\.Y*´3nêQ¶$1L,<K$h{¶2)n.i´Í3¬O$)êQALK$,ÕêÍ)².i3f*CKB´2,".M§1 ×.L´$^ jO$)ê2ALK2,ÕêQ)C.43p*nKB´2,=N^~1¶$1´Q^$*´$OKN´ 3¦5$1M§1L,8*^NZ21i,gAL.iMPMfê2*´2O AL.iMP0QK?5$ê$^NMj.3j1i, #À×"$PÖ¬Sg´Ò3f5Q1KN´$1#5$.L´$^$=¥¶2)C.Ń3 fO2)êÍAK$,£êQ)C.43p*nKN´Q,D3f.iý21¶2).LAi1KN´ 3¦,/5$¶21 1AB*AhjKB*-AY´{*²,/3¦*C11L´Q,,ÕÖ~Z¬SD, ´],83-1 5QN1IZ2K?13+´25$A1L1 MR5$7X.i´$,Õ´2^$m-=/Ï# .if.BO2mf);"ê25$ALK$M ,£aQêQ1L)nMj.=:3j*CKN)+*²´Qý2,"1 .LMj*C1#´1´$\]AiKN.LZN\]Ń\3¦1.YM§)C1,8^]= KN0N´ZN3 a$1^2MÆ*CKÍ,£¶2M×)CbI.4ê ê~¶{=?,/KN3¦5$\]1#1)n.3-,Õ3+3¦1LMfM×Z$A40$3+1BZ$*Mj´2.LO ) ,/¶21JIAB*)ChjKN*-0$A.Y3¦)K`.¶¬¶N)¶2.ŃMjK$3p,4.iÖ A45¬1,TAL.´Ò0$1 1\¶2)CK?êQ1?^3nKÒ^N1B,/ALMj*0$1O2)ê2AYK?¶2MjKQ3+1YKN\]1,ÖBÅl*CMj,£3j=$O$)²êQABKN¶$MjK?3¦1L*´2,D\ZQ,£3×021 ¶$^~1M§K?3f1i3¦1A4K$3p1\]^]1Ò0Íê.´$,£.B¶$)êÍ1Y,8AL*-*n,Ih¦*-A]0Nê,Õ3¦9.L*´2a{*´$Ö2O U#´{.´Q)C*n^ ýQ¦1ÒKNM\]*C,8.LK$\)C.4\]3p1.B^])C,0N*ê ´ .Lµg¶~52¶$*CMA4KB5 ¶$M\]*C.4.i3¦1ŃêvA5$OQM§)nKNê$\AYKN.i¶$3+KÍMjK?O~3jMP1i.iK?¶N\5$ê 1L,Ih¦KN5$M%.,£e2Z~1]0{0$,/+11LB1Z$´ 1,ÕŃ3+3ÆZ$^$,/ZN*C1L02^ m #CÁ2 Ç $j= ¶2)C.Ń3 O2)ê2AiK?¶2MjKQ3+1YKN\]1L, .iM§1 ,3j*C)C)Ë¶$K~KÍMj)ê^$1i,AM§*021i^¥Ö b]KNµX14e21M§= ,K?\1õ1 $¶Q1M§*n\ 1Ń3f.Y)v^N.3+. AYK?´$AB1Mf´2*´$OOQ)²êQALK$,ê2).3¦*-KB´2,"KNh×> ÔkÆ,".M§1g.e$.B*C)n.i0¬)n1NÖiÅlKÍMl*C´$,Õ3¦.´2A1B=B.L,"\].LŃê .Y, Á].´2^ 4ÃO$)²êQALKNhjKNMf\, KNh×.X,£Z$0?3p*C)-*C,8*´,/1M*´Q1D¶$M§K?3f1i.B,/1D.L´Q^.DklJD_fk -¶¬K$)²ê~O~.B).BA43+Z$MKB´$.B,/1g*Ń5¬*0¬*3fKNM¬¶¥MjKN3+1B*/´ j=NMj1L,£¶Q1LA43j*eÍ1L)²êQ=?52.e21 0Q1L1´:e2*-,/Z$.L)C*CÄL1i^ 0Nê hj)nZ2KNM§1i,A1´Í3D,Õ3f.Y*´2*´$O:µ#*3C5:k×M§K (<\1Mj.L)C^$=<,£¶Q1LAL*nh¦*-AËh¦KÍMIOQ)nêQALKN¶$MK?3¦1L*´Q, #Á2 Ã $ÖR7 ,/52*nhC3I*C´ 1L)C1A3+M§K?¶N52KNM§143p*AË\]KB0{*C)C*²3CêÔhjK$)+)CKÍµ#*´2Ov3fM§1.3f\]1´Í3Tµ#*3+5Ô. ¶21¶N3+*C^$1 mfO$)êQA?K~,8*C^N.B,/11´$.0{)1L^ 3C521 ¶$M§1i,81´{Ai1%KNh m-O2)²ê2AYK$,£ê$)C.43p*-KB´$,<KN´3C521g>%SDFWT7 ¶$MK?3¦1i*n´3nK021%^$1\]KN´$,£3+Mj.43p1^ #nÀ~/Á $ÕÖ WX1iAL14Ń3p)ê2= >%KB´$7 A5$M§KN\.3¦KNO$Mf.¶$5Nê µI.B,Z{,/1L^ 3+K A.i¶N3+Z$Mj1 mpOQ)êÍALKN¶$MfKN3¦1L*´¬, hfMjK$\ \].3fZ$Mj1 ÜIÝ/Þ2ßNàá$â¼ãRäiàä,£3+1L\], #Á$/Á $PÖl;R5$1 Ai1B)-)"µI.Y)-)<,Z$02mp¶$MjKN3+1LKB\Ò1 KB0Í3+.B*´21^ µI.i,cM§*-A5Ô*´ O2)êÍAK$,*^$1Ò5NêQ^$MfK2).B,/1L, iÎ G. $¯ ¹ ª L¯Pª. 0.399 0.397 0.391 0.386 0.365 0.364 0.346 0.338 0.337 0.324 0.317 0.300 0.289 0.288 0.187 0.183. . . . . . .