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Physiological response curves and additional results

We modelled the physiological response of species to a non-resource environ-mental factor following the conceptual hypothesis of Maestre et al. (2009), who assumed that plant species are ordered on a continuum ranging from pure com-petitors to pure stress-tolerants. Species were able to randomly colonize locations alongside an environmental gradient with varying levels of both non-resource and resource environmental factors (Fig. A.6.1.1). Competitive species survive and grow best in optimal conditions, but are very sensitive to environmental stress.

Stress-tolerant species, on the other hand, maintain moderate levels of survival and growth for higher stress levels.

For implementing this framework, we derived a flexible function able to reproduce different functional responses. The function is

P(x) = kp0er1x

k+p0er1x1c(er2x1) (7.11) where P(x) is the response variable, that in our scenario corresponds to survival or growth probability. The parameterisation we obtained for the species at the ends of the continuum, mimicking Fig. 1 of Maestre et al. (2009), is given in Table A.6.1.1. With that parameterisation at the extreme behaviours, we generated 20 response curves for model species (Fig. A.6.1.2), such that the transition between pure competitors and pure stress tolerant species is smooth, and all species have maximum survival probability in the absence of environmental stress.

Table A.6.1.1:Parameterisation of7.11for purely competitive and purely stress-tolerant species.

Intermediate species have parameters within these ranges in all cases.

survival growth

stress-tolerant competitor stress-tolerant competitor

k 1 0.1 0.7 0.1

p0 1 1 0.7 1

r1 0.1 0.01 0.1 0.05

r2 1 0.85 0.5 0.5

c 3∗105 3∗104 5∗103 0.05

Figure A.6.1.1:A series of locations with linearly varying conditions of a resource factor (repre-sented by circle size) and non-resource factor (from light to dark blue). The grid repre(repre-sented in this figure is of size 20*20, whereas the one used in the model is of size 50*50.

Figure A.6.1.2: Physiological response curves of 20 modelled species to a single non-resource environmental factor. Probabilities of survival (left panel) and growth (right panel) are modelled, and species range from purely stress-tolerant (dark blue curves) to purely competitive (yellow curves). Stress-tolerant species maintain a high probability of survival under a higher range of environmental stress, and also keep a moderate growth probability for longer than competitive species. The latter, on the other hand, are very sensitive to environmental stress, but grow better than stress-tolerant species under ideal conditions. These functional responses are adapted from Fig. 1 ofMaestre et al.(2009)

Figure A.6.1.4:Distribution of the net differences between simulations with or without facilitation.

Bright colours indicate high values of a metric in the simulations with facilitation relative to the ones without facilitation, and viceversa for darker shades. Note that the colour scales in the three panels are not equivalent; this is due to the different ranges of the differences among metrics.

Abrams, P. A. 1980. Are Competition Coefficients Constant? Inductive Versus Deductive Approaches. The American Naturalist 116:730–735.

———. 1987. On classifying interactions between populations. Oecologia 73:272–

281.

———. 1992. Predators that Benefit Prey and Prey that Harm Predators: Unusual Effects of Interacting Foraging Adaptation. The American Naturalist 140:573–

600.

———. 2001. Describing and quantifying interspecific interactions: A commen-tary on recent approaches. Oikos 94:209–218.

Agrawal, A. A., D. D. Ackerly, F. Adler, A. E. Arnold, C. C´aceres, D. F. Doak, E. Post, P. J. Hudson, J. L. Maron, K. A. Mooney, M. E. Power, D. W. Schemske, J. Stachowicz, S. Strauss, M. G. Turner, and E. E. Werner. 2007. Filling Key Gaps in Population and Community Ecology. Frontiers in Ecology and the Environment 5:145–152.

Aizen, M. A., C. L. Morales, D. P. V´azquez, L. A. Garibaldi, A. S´aez, and L. D.

Harder. 2014. When mutualism goes bad: Density-dependent impacts of intro-duced bees on plant reproduction. New Phytologist 204:322–328.

Alerstam, T., and J. B¨ackman. 2018. Ecology of animal migration. Current Biology 28:R968–R972.

Allen, D. C., and J. S. Wesner. 2016. Comparing effects of resource and consumer fluxes into recipient food webs using meta-analysis. Ecology 97:594–604.

Allesina, S., J. Grilli, G. Barab´as, S. Tang, J. Aljadeff, and A. Maritan. 2015. Pre-dicting the stability of large structured food webs. Nature communications 6:7842.

Allesina, S., and S. Tang. 2012. Stability criteria for complex ecosystems. Nature 483:205–8.

Almaraz, P., and D. Oro. 2011. Size-mediated non-trophic interactions and stochas-tic predation drive assembly and dynamics in a seabird community. Ecology 92:1948–1958.

Amarasekare, P. 2008. Spatial Dynamics of Foodwebs. Annual Review of Ecology, Evolution, and Systematics 39:479–500.

Ara ´ujo, M. B., and A. Rozenfeld. 2014. The geographic scaling of biotic interac-tions. Ecography 37:406–415.

Arditi, R., J. Michalski, and A. H. Hirzel. 2005. Rheagogies: Modelling non-trophic effects in food webs. Ecological Complexity 2:249–258.

Arellano, G., M. N. Uma ˜na, M. J. Mac´ıa, M. I. Loza, A. Fuentes, V. Cala, and P. M. Jørgensen. 2017. The role of niche overlap, environmental heterogeneity, landscape roughness and productivity in shaping species abundance distribu-tions along the Amazon–Andes gradient. Global Ecology and Biogeography 26:191–202.

Arthur, W., and P. Mitchell. 1989. A revised scheme for the classification of population interactions. Oikos 56:141–143.

Austin, M. P., and M. J. Gaywood. 1994. Current problems of environmental gradients and species response curves in relation to continuum theory. Journal of Vegetation Science 5:473–482.

Austin, M. P., and T. M. Smith. 1990. A new model for the continuum concept.

Pages 35–47inProgress in Theoretical Vegetation Science. Springer, Dordrecht.

Bachelot, B., M. Uriarte, and K. McGuire. 2015. Interactions among mutualism, competition, and predation foster species coexistence in diverse communities.

Theoretical Ecology 8:297–312.

Balcan, D., V. Colizza, B. Gonc¸alves, H. Hu, J. J. Ramasco, and A. Vespignani. 2009.

Multiscale mobility networks and the spatial spreading of infectious diseases.

Proceedings of the National Academy of Sciences 106:21484–21489.

Baldridge, E., D. J. Harris, X. Xiao, and E. P. White. 2016. An extensive comparison of species-abundance distribution models. PeerJ 4:e2823.

Banaˇsek-Richter, C., L. F. Bersier, M. F. Cattin, R. Baltensperger, J. P. Gabriel, Y. Merz, R. E. Ulanowicz, A. F. Tavares, D. D. Williams, P. C. De Ruiter, K. O.

Winemiller, and R. E. Naisbit. 2009. Complexity in quantitative food webs.

Ecology 90:1470–1477.

Barab´asi, A.-L., and R. Albert. 1999. Emergence of Scaling in Random Networks.

Science 286:509–512.

Barab´asi, A.-L., and M. P ´osfai. 2016. Network Science. Cambridge University Press, Cambridge, United Kingdom. OCLC: ocn910772793.

Barbosa, M., G. W. Fernandes, O. T. Lewis, and R. J. Morris. 2017. Experimentally reducing species abundance indirectly affects food web structure and robustness.

Journal of Animal Ecology 86:327–336.

Barrio, I. C., D. S. Hik, C. G. Bueno, and J. F. Cahill. 2013. Extending the stress-gradient hypothesis - is competition among animals less common in harsh environments? Oikos 122:516–523.

Barth´elemy, M. 2011. Spatial networks. Physics Reports 499:1–101.

Bartomeus, I., D. Gravel, J. M. Tylianakis, M. A. Aizen, I. A. Dickie, and M. Bernard-Verdier. 2016. A common framework for identifying linkage rules across

differ-ent types of interactions. Functional ecology 30:1894–1903.

Bascompte, J., and P. Jordano. 2007. Plant-Animal Mutualistic Networks: The Architecture of Biodiversity. Annual Review of Ecology, Evolution, and System-atics 38:567–593.

———. 2013. Mutualistic Networks. Princeton University Press, Princeton.

Bascompte, J., P. Jordano, and J. M. Olesen. 2006. Asymmetric Coevolutionary Networks Facilitate Biodiversity Maintenance. Science 312:431–433.

Basset, Y., and R. L. Kitching. 1991. Species number, species abundance and body length of arboreal arthropods associated with an Australian rainforest tree. Ecological Entomology 16:391–402.

Bastolla, U., M. A. Fortuna, A. Pascual-Garc´ıa, A. Ferrera, B. Luque, and J. Bas-compte. 2009. The architecture of mutualistic networks minimizes competition and increases biodiversity. Nature 458:1018–20.

Bates, D., M. M¨achler, B. Bolker, and S. Walker. 2015. Fitting Linear Mixed-Effects Models Using lme4. Journal of Statistical Software 67.

Bender, E. A., T. J. Case, and M. E. Gilpin. 1984. Perturbation Experiments in Community Ecology: Theory and Practice. Ecology 65:1–13.

Berlow, E. L. 1999. Strong effects of weak interactions in ecological communities.

Nature 398:330–334.

Berlow, E. L., J. A. Dunne, N. D. Martinez, P. B. Stark, R. J. Williams, and U. Brose.

2009. Simple prediction of interaction strengths in complex food webs. Pro-ceedings of the National Academy of Sciences 106:187–91.

Berlow, E. L., A.-M. Neutel, J. E. Cohen, P. C. de Ruiter, B. Ebenman, M. C.

Emmerson, J. W. Fox, V. A. A. Jansen, J. Iwan Jones, G. D. Kokkoris, D. O.

Logofet, A. J. McKane, J. M. Montoya, and O. L. Petchey. 2004. Interaction strengths in food webs: Issues and opportunities. Journal of Animal Ecology 73:585–598.

Bersier, L.-F. 2007. A history of the study of ecological networks. Pages 365–421 inBiological Networks. World Scientific.

Bertness, M. D., and R. Callaway. 1994. Positive interactions in communities.

Trends in Ecology & Evolution 9:191–193.

Boccaletti, S., G. Bianconi, R. Criado, C. del Genio, J. G ´omez-Garde ˜nes, M. Ro-mance, I. Sendi ˜na-Nadal, Z. Wang, and M. Zanin. 2014. The structure and dynamics of multilayer networks. Physics Reports 544:1–122.