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Developmental temperature and somatic excision rate of mariner transposable element in three natural
populations of Drosophila simulans
F Chakrani, P Capy, Jr David
To cite this version:
F Chakrani, P Capy, Jr David. Developmental temperature and somatic excision rate of mariner
transposable element in three natural populations of Drosophila simulans. Genetics Selection Evolu-
tion, BioMed Central, 1993, 25 (2), pp.121-132. �hal-00893986�
Original article
Developmental temperature and somatic excision rate of mariner transposable
element in three natural populations
of Drosophila simulans
F
Chakrani. P Capy JR David
Centre National de la Recherche Scientifaque, Laboratoire de Biologie
et G!n6tique Evolutives, 91198 Gif sur-Yvette Cedex, France
(Received
21 September 1992; accepted 12 November1992)
Summary - The temperature effect on the somatic excision rate of an inactive copy
(peach)
of the mariner transposable element, inserted in the white gene and responsible ofthe mutation
(t!*!),
was investigated in isofemale lines from 3 natural populations of Dsimulans. The somatic excision rate of the peach element was measured by the proportion
of mosaic males in the offspring of a test-cross between a wild type male
(originating
fromnatural
populations)
and white peach females of a reference strain(GB1).
A significanteffect of the breeding temperature was detected in 2 out of the 3 populations investigated,
ie Loua
(Congo)
and Bordeaux(France).
In these 2 populations, the proportion ofmosaic males increased with temperature. In the third population
(Agadir, Morocco),
the proportion of mosaic males was always high whatever the temperature. A slight correlation between the excision rate and the number of mariner copies was observed. Finally, this temperature effect may be related to a 14-bp sequence localized in the 5’ inverted repeat of the element showing 50-57% of homology with sequences of heat shock protein promoters.Drosophila simulans / transposable element / mariner element / temperature Résumé - Température de développement et taux d’excision de l’élément mariner dans trois populations naturelles de Drosophila simulans. L’effet de la température sur le
taux d’excision somatique d’une copie inactive
(peach)
de l’élément mariner, insérée dans le gène white et responsable de la mutation white peach(w pch ),
a été analysé dans des lignées isofemelles de 3 populations naturelles deDrosophila
simulans. Le taux d’excision somatique de l’élément peach a été mesuré par le pourcentage de mâles ayant des yeuxmosaïques dans la descendance des croisements entre mâles issus des populations naturelles
et des femelles issues d’une lignée de référence
(GB1).
Un effet de la température a étédécelé dans 2 populations
(Loua
etBordeaux).
Dans les 2 cas, le pourcentage de mâles* Correspondence and reprints
mosaïques augmente avec la température d’élevage. Dans la troisième population
(Agadir),
ce pourcentage est toujours élevé quelle que soit la température. Par ailleurs, bien que le taux d’excision de l’élément peach augmente avec le nombre moyen de copies de l’élément
présent dans les différentes populations, une seule corrélation significative au seuil de 5% a été trouvée. Enfin, une séquence de 14 pb, située dans l’inversion répétée en # de l’élément, présentant 50 à 57% d’homologie avec des séquences de promoteurs de protéines
du choc thermique, pourrait être responsable des effets température détectés.
Drosophila simulans / élément transposable / élément mariner / température
INTRODUCTION
The genome response to environmental stresses has been
investigated
in many ways(Hoffmann
andParsons, 1991),
and oftenby considering
the mutator effect ofvarious chemicals and radiations. In this context and
during
recent years, several authors haveproposed
that an environmentalfactor,
like temperature, couldmodify
the
transcription and/or
thetransposition
rate oftransposable
elements(Strand
and
McDonald,
1985; Junakovic etal, 1986;
lVIcDonald etal, 1987).
On the otherhand, populational factors,
likeinbreeding,
could be involved in such aphenomenon.
However, although
Bi6mont et al(1987, 1990)
showed spontaneous mobilization ofcopia
and P elements in 2 inbredlines,
it cannot be assumed thatconsanguinity
was
responsible
for these movements.Among
the differenttransposable
elements described inDrosophila,
a temper-ature effect on the
excision and/or transposition
rate has been demonstrated in several of them. In the P-M system,hybrid dysgenesis,
due to themobility
of Pelements,
and transposaseproduction
are enhanced athigh
temperature(Engels,
1989 and references
therein).
In the I-R system, thereactivity
of I strains is affectedby
temperature(Picard
etal, 1977; Bucheton, 1978).
Junakovic et al(1986)
andRatner et al
(1992) reported
an increase oftransposition
rate related to tempera-ture for
copia-like
elements and Strand and McDonald(1985)
showed an increaseof
copia homologous transcript
after a heat shock stress. Thisphenomenon
is notlimited to
Drosophila,
but has also beenreported
in manyspecies
like Antirrhinum majus for the element Tam3(see
Coen etal,
1989 and referencestherein),
Saccha-romyces cerevisiae for the element
Ty (Boeke, 1989)
and Escherichia coli for the element Tn3(Sherratt, 1989).
InDrosophila,
thephenomenon
related totransposi- tion,
ie thephenotypic
effects of thetransposition/excision,
are stimulated when thebreeding
temperature increases.But,
in otherorganisms
and for othertransposable
elements such as
Z’y
andTam3,
thetransposition
was increased at low temperature.For the first type, an interaction with promoters sensitive to temperature could ex- ist while for the second type, it is assumed that a thermal
degradation
ofproducts
involved in the
transposition might
occur.For the mariner element some temperature effects have
already
been mentionedby
Garza et al(1991).
Such effects were observed in a Dmelanogaster
transformed line in which thegerminal
excision of the non-autonomouspeach
element wascontrolled
by
the active element Mosl. In thisline,
the excision rate varied from 10.7% at 18°C to 26.4% at 29°C. In D simulans the samephenomenon
was observedand the
germinal
excision rate of thepeach
elementranged
from 0.2% at 18°C to 3.4% at 25°C.In the present
work,
weinvestigated
the temperature effect on the somatic excision rate of an inactive element(the peach
element inserted in the whitegene)
when induced
by
active elements present in isofemale lines of 3 naturalpopulations
of D simulans. The
general
occurrence of active mariner elements waspreviously reported
in these naturalpopulations (Capy
etal, 1990).
Arelationship
between the average number ofcopies
per line and the level of somatic excision was alsoanalysed.
We found a
significant
temperature effect for 2 of the 3populations
tested and aslightly significant
overall correlation between the number ofcopies
and the excisionrate.
Finally,
ananalysis
of mariner sequence in 5’ of the initiation site showed a14-bp
sequence with 50-57% ofhomology
with promoter sequence of several heat shockprotein (hsp)
genes.MATERIALS AND METHODS
Natural
populations
andbreeding
temperatureThe 3
populations
used in this work came from Loua(Congo), Agadir (Morocco)
and Bordeaux
(France).
Season and average temperature at the time of captureare the
following:
forLoua,
November 1989, at the end of thedry
season andthe
begining
of the wet season, the averagedaily
temperature was !26-27°C;
for
Agadir, spring
1989 with an averagedaily
temperature of 21°C andBordeaux,
autumn 1989, more
precisely during
thevintage
season and an average temperature of 17°C. Flies werecaught by
attractivefermenting
traps ordirectly by sweeping
on naturalbreeding
sites. Isofemale lines were initiated from eachpopulation (25
forLoua,
22 forAgadir
and 31 forBordeaux)
and < 5generations
werekept
at 25°C inthe
laboratory
conditions before theiranalysis.
The isofemale line method was usedto
keep
most of theoriginal variability
of thesample
and to reduce the selection effect oflaboratory
conditions(Capy, 1987).
Theexperiments
wereperformed
at3
breeding temperatures: 17,
25 and 29°C.Somatic excisions
The
transposable
element mariner can be excised eithersomatically
or in thegermline.
Somatic excisions arephenotypically
observed when an active element determines the excision of the non-autonomous elementpeach
inserted in the white gene(mutation
whitepeach, w!’°h).
In this case, flies with mosaic eyes are observed.A mosaic eye is a white
peach phenotype
with 1 or several red spots(see,
forexample: Bryan
andHartl, 1988; Hartl, 1989).
Each red spotcorresponds
to anexcision event, and the size of a red spot is related to the excision time
during
thedevelopment.
Toquantify
the rate of excision in asingle individual,
4 classes of mosaic flies(Mos-0, Mos-1,
Mos-2 andMos-3)
were definedaccording
toCapy
etal
(1990s) ;
see also table I for a definition of the classe.Estimation of the somatic excision rate
The somatic excision rate, in each isofemale
line,
was estimated after a test-crossbetween 5 males of the line tested and 5 females of the GB1 strain
(figure 1).
Thelatter strain of D
simulans,
builtby
GlennBryan (Bryan
andHartl, 1988),
containsa
single
inactive element(the peach element)
inserted in the white gene. This elementwas introduced in D simulans from the white
peach
strain of Dmauritiana,
afteran
interspecific
cross followedby
several backcrosses. The GB1 strain isextremely
stable and no revertant has been observed. The somatic excision rate was estimated
by
the ratio of mosaic males observed in theF 1
of the test-cross over the total number ofF,
malesexamined,
ie at least 10males/line
but whenpossible
50males/line.
Southern blots
For each isofemale
line,
DNA of 25-30 individuals wasprepared,
as describedby
Junakovic et al
(1984), completely digested
with the restriction enzymes BamHI andHindIII,
which do not cut in theelement,
and loaded in asingle
lane of a 0.8%gel
agarose. To detect all elements(complete
anddeleted),
filters were thenhybridized
with a mixture of theSspI-Xhol
and of the Xholl-Nhelfragments
ofmariner
(see Maruyama
and Hartl,1991).
These 2fragments
cover 1.1 kb of the total element(total length
of the element = 1.286kb).
Theseprobes
were labelledby
nick translationaccording
to Maniatis et al(1982). Hybridization
andwashing
procedures
were as Junakovic et al(1984).
RESULTS
Temperature
effectTable I
gives
the percentage of mosaic flies(PMF)
in eachpopulation
for the 3breeding
temperatures and statisticalcomparisons
aregiven
in table II. The 3populations
present some differentPMF,
the average valuesalways being higher
in
Agadir
than in the 2 otherpopulations
whatever thebreeding
temperature. A detailedanalysis
of table I shows that the PMFbelonging
to the Mos-3 class is alsohigher
inAgadir
than in Bordeaux and Loua where the Mos-0(no mosaic)
individuals are more abundant.
The PMF increases with temperature for Bordeaux and Loua but not for
Agadir.
The differences between the total PMF at 17 and 29°C arestatistically significant only
for the first 2populations. Concerning Agadir,
the PMF seems tobe
independent
of the temperature. Such a result can also be due to themethod
used to
quantify
the amount ofindependent
excisions in each individual. With thismethod,
it is almostimpossible
to discriminate between individualshaving
ahigh level
of somatic excision, since all of them aregrouped
in the Mos-3 class.In other
words,
it ispossible
that a temperature effect still existed in theAgadir population
but such effect could not bequantified
because the basic excision rate, in thispopulation,
remainedhigh
whatever thebreeding
temperature.Table II shows that in Bordeaux and Loua both temperature and isofemale line effects were
detected,
but not inAgadir. Again,
a more detailedanalysis,
classby class,
showed that the temperature effect washigher
inpopulation
in which the main class at 17°C was theMos-1,
ie Loua and Bordeaux. In thesepopulations,
the average number of Mos-1 individuals decreases at 25°C and
29°C,
while theaverage number of Mos-2 and Mos-3 individuals increases.
Average
number ofcopies
per isofemale lineThe average number of
copies (ANC)
per isofemale line was estimatedby counting
the number of bands on Southern filters
(fig 2).
This average number includes both active and inactivecopies.
Alarge polymorphism
was observed both within and betweenpopulations.
In eachpopulation,
it ispossible
to find some isofemale lines with ahigh
or a small number ofcopies (see fig 2).
Forinstance,
forAgadir,
line21 presents an ANC of 17 elements while a
single
element was detected in line 12.The same
phenomenon
can be observed for the 2 otherpopulations
but thehighest
ANCs per line were observed for
Agadir.
On the otherhand,
it must be stressed that no line was found to betotally
free of mariner, and that the average number ofcopies
were under-estimated sinceco-migration
of bands anddegradation
ofhigh
molecular
weight
bands may occur.In
this analysis
30, 22 and 21 isofemale lines were tested forBordeaux,
Loua andAgadir, respectively,
and the ANC per line are 7.9 ±1.2 forAgadir,
5.2 t 0.5 forBordeaux and 4.7 ! 0.6 for Loua. The classification of
populations
is the same asregards
the PMF and theANC, ie Agadir,
Bordeaux andLoua,
from thehighest
to the lowest values. Within each
population,
aSpearman
rank correlation testbetween the PMF and the ANC of the different lines for each
breeding
temperature, showedonly
1significant
correlation. Seven out of 9 coefficients werepositive,
but not all coefficients wereindependent
since the numbers of marinercopies
per line were used for the 3 temperatures.Therefore, although
some tendencies aresuggested,
it remains difficult to conclude that arelationship
exists between theexcision rate and the number of
copies
in wildpopulations,
and such a result hasto be confirmed from a
larger
set of data.DISCUSSION AND CONCLUSION
Our results show that in some natural
populations
of D simulans:1)
there is atemperature
effect on the somatic excision rate of an inactive copy of the mannertransposable element, 2)
this temperature effect mayvary
from onepopulation
toanother and
3)
thebetween-population variability
of the excision rate measuredby
the PMF could be related to the average number of mariner
copies
perpopulation.
The
relationship
between the excision rate and thebreeding
temperature suggests that a promoteracting
on the transposaseproduction
is sensitive to temperature.This could be an internal promoter of the transposase, included in the
transposable
element
itself,
or an external promoter, close to the insertionpoint
of the trans-posable
element. In this respect, the role of thegenetic
environment seems to bean
important
component of mariner elementactivity
asalready
demonstratedby
the
position
effectsfrequently
observed(Garza
etal,’1991; Maruyama
etal, 1991;
Medhora et
al, 1991).
A
comparison
between the mariner sequence in 5’ of the initiation site and the promoter sequence of several heat shock genes was made(table III). Homology
of 57% between a14-bp
sequence in the inverted repeat of the mannertransposable
element and a
putative
promoter ofhsp-70
was detected(see:
Strand and McDon-ald, 1985;
and referencestherein). Homologies
of 50% were also observed with othersequences of heat shock promotors and with a
14-bp
sequence of thecopia
trans-posable
element(sequence
localized inposition —
110bp
from thetranscriptional
start, ie in the LTR of theelement).
For this latterelement,
a temperature effecton the
transcription
rate was also described(Strand
andMcDonald, 1985).
In thecase of mariner, it is thus
possible
that thethermosensitivity
of thetranscription
rate is an intrinsic property of its 5’ inverted repeat.
Another mechanism which could
explain
arelationship
between thebreeding
temperature and an excision rate would be a thermaldegradation
of aproduct
involved in the
repression
of the elementmobility.
In mariner, severalposition
effects have been described
(Maruyama
etal, 1991),
but we do not know whetherthere is a
positive
or anegative
effect of thegenetic
environment on the transposaseproduction by
autonomous elements. In case of anegative effect,
a thermalsensitivity
of aproduct responsible
for such arepression
should result in an increase of transposaseproduction
and in an increase of excision rate. For the moment, dataare available on neither the
transposition
norregulation
mechanisms of the mariner element to test thishypothesis.
In the 3
populations investigated,
our results suggest that arelationship
existsbetween the average number of
copies
and theactivity
level of the mariner elements measuredby
the excision rate.Although
the presence of active elements is thesepopulations
isconfirmed,
it is however notpossible
to estimate the number of activecopies
in eachpopulation
and each isofemale line.The
activity
of the mariner element may varyaccording
to its own sequence and to itsgenomic position (Maruyama
etal, 1991;
Medhora etal, 1991; Capy
etal, 1992). Therefore,
agiven
excision rate can be due to asingle
elementhighly
activeor to several elements with a low
activity.
In this latter case, adosage
effect could exist. Such adosage effect,
for the marinerelement,
hasalready
been stressedby
Garza et al
(1991).
In the presentwork,
it islikely
that thetransposable production
is
higher
inAgadir
than in Bordeaux and Loua. In otherwords,
it ispossible
thatBordeaux and Loua were
genetically
more stable thanAgadir
at the moment oftheir
sampling.
The
variability
of the temperature effect observed between the three naturalpopulations
raises thefollowing question:
does thisvariability correspond
togenetic
drift betweengeographically
distantpopulations
or to different localadaptations?
Very
few data are available ontransposable
elements in naturalpopulations originating
from differentbiogeographic
areas. For numerousgenetical traits,
likemorphological
traits orenzymatic polymorphism,
it seems that in Dmelanogaster (a sibling species
of Dsimulans),
an influence of the average temperature islikely
forthe occurrence of latitudinal clines
(Lemeunier
etal, 1986;
David andCapy, 1988).
D
simulans,
on the otherhand, generally
exhibits a lowergeographic differentiation, although regular
latitudinal variations have been observed in several cases(Parsons, 1983;
Lemeunier etal,
1986; Hoffmann andParsons, 1991). Therefore,
such a climatic factor is able to inducegenetic
variations among naturalpopulations
ofcosmopolitan species.
To detect avariability
of temperature effect on excision rate oftransposable
elementsaccording
to the average temperature of thegeographic
area of natural
populations,
many morepopulations
should beinvestigated.
In
conclusion,
it seems that temperature is one of the environmental factors ableto induce the somatic
transposition
of the mariner element in naturalpopulations
of D simulans.
However, populations
withhigh
basic excision rate could remaininsensitive to this factor.
For the moment, the data available are not sufficient to check this conclusion.
But,
it must be stressedagain
that forDrosophila,
temperature is a factor which shows seasonal anddaily
variations in severalplaces. Therefore,
it ispossible
that temperature can inducegenomic
stresses strongenough
to stimulate mobilisation and rearrangement oftransposable
elements. If so, the reasons and the mechanisms of these remain to beinvestigated.
ACKNOWLEDGMENTS
We thank J Stockel for providing the populations from France; E Pla and D Defaye for
technical assistance; and 2 anonymous reviewers for helpful comments.
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