Workshop : Comparative mapping in Salicaceae

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Workshop Comparative Mapping Salicaceae 8-10th March 2010, Orléans, France

Workshop

Comparative Mapping in

Salicaceae

8-10 March 2010

Véronique Jorge

INRA Orléans, P1d

Data synthesis

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Data for Salicaceae

Summary of available data:

Framework genetic maps with genome anchoring markers

and QTL data for growth related traits

Pedigree

Progeny

size

Nb of anchoring

markers

QTLs

# of

Reference(s)

F2 TDxTD (POP1)

210

83 188,

(37, 43)

Rae et al 2008, (2009)*

DxT (POP2)

330 74, 87

77 Jorge et al.

(unpublished)

DxT, DxN (POP3)

180, 182 19, 14, 14, 16

21, 29,

48, 20

Dillen et al, 2009*

AxA (POP4)

141 55, 51

10, 11

Paolucci et al.

(unpublished)*

(TxD)xD

396

178

63 Dorst at al 2009

Novaes et al. 2009

*Data available at

http://www.evoltree.soton.ac.uk/cmap/

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Data for Salicaceae

Shared markers between maps and anchoring on the genome sequence

05/10/2010

Most of shared markers are

SSR markers from:

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0.0 10.0 cM – 1.106_pb 20.0 cM – 2.106_pb E45G2810r PMGC510 e37f3704 PMGC2573 PMGC2855 PMG2747 E40G0302 E36G1306r e38f4409r E34G3421r E31G422 H ei gh t1 D el ta C C irc um 2 C irc um 1 K14.700 Win3 E1M8.11 P1275 E1M8.5 PMGC510 PMGC2855 O20.1200 H ei gh t1 H ei gh t2 J7.950 Q10.550 P17.1800 PMGC2786 Q14.1300 C irc um 1 S yl le p1 Win3 PMGC510 PMGC2855 PMGC2571 PMGC2887 ORPM149 PMGC2786 D3.2100 D5.1050 E2M4.4 F14.650 P1055 PMGC2855 PMGC2571 E2M2.5 I14.1100 Δ de lta H PMGC2571 CACTG-38 PMGC2887 ORPM149 PMGC2786 H eig ht1 syllep Circ um 1 C irc um 1 H eig ht2 C irc um 2 Δ D IA M H T -1 SLA SY L

LG_X

Alignement of 4 genetic maps of the LG_X on the genome sequence

Problems:

• Chromosomes splitted in two LG

• More anchoring markers with the genome than between maps

• « Correlated » traits

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Map order: Rae_2009 / Jorge_2010_D / Jorge_2010_T / Novaes_2009 / Paolucci_6K3 / Paolucci_14P11

CCCCT-39 CCCCT-38 PMGC634 PMGC2789 ORPM30a PMGC2852 PMGC93 PMGC2889b PMGC575 AGCTG-10 CCCCT-N12 AGCTG-13 CCCCT-N13 CACTG-21 PMGC2786a PMGC2385 TCCGT-20

LG_I

PMGC2786 rE3M5.10 rE3M5.9 E2M3.10 E2M4.10 E2M4.19 E4M4.4 E2M4.6 PMGC2098 E1M8.9 E4M2.2 PMGC93 bu831219 PMGC2852 E4M2.1 E1M7.3 rE2M4.24 E1M5.8 rP1199 PMGC2550 Jo rg e_ 20 10 _ D _c irc um 1 _4 Jo rg e_ 20 1 0_ D _ he ig h t1 _ 1 Jo rg e_ 20 10 _ D _c irc um 1 _5

LG_I

PMGC2098 rM2.800 F14.450 Q9.1100 P17.600 PMGC2084 M14.2000 E1M3.6 PMGC2385

LG_I

GCPM2903 GCPM3205 GCPM124 GCPM834 GCPM1568 GCPM8331 UFLA_1 GCPM3784 gw9782 GCPM2837 GCPM947 GCPM3231 GCPM3214 GCPM825 GCPM3017 PMGC2731 PMGC575 GCPM1782 PMGC2786 UFLA_250 PMGC2385 GCPM3688

LG_I

A4m2K PMGC2500 A18K13 A16K8r A24K4 A13K5 A23K4r ORPM20 WPMS18 A24K2 ORPM177

LG_I

A18m14P bu813833 A16m13P A17m3Pr A12mP8r A17m8Pr A11mP1 A16m3Pr PMGC2818 P a olu cc i_ 20 10 _1 4 P 11 _ H eig ht2 _1

LG_I

0 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420

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Map order: Rae_2009 / Jorge_2010_D / Jorge_2010_T / Novaes_2009 / Paolucci_6K3 / Paolucci_14P11

CCCTC-32 CCCTC-N10 PMGC667 PMGC422 AGCTG-N11 PMGC684 PMGC2797 PMGC2766 ORPM260 PMGC2418 R ae _ 20 09 _ S LA _7

LG_II

E1M3.7 E3M5.4 PMGC667 E2M3.5 E1M6.10 E3M5.13 E2M4.0 E3M1.10 PMGC2088 PMGC2418 E4M4.12 Jo rg e _2 01 0_ D _h eig ht1 _F Jo rg e _2 01 0__D _c irc um 1_ F Jo rg e_ 20 10 _D _s yll ep 1 _1 Jo rg e _2 01 0_ D _h eig ht2 _F

LG_II

rL15.1200 E2M4.29 PMGC223 PMGC2088 ORPM260 E5M4.2 PMGC2418 Jo rg e_ 20 10 _T _d elt aC _ F

LG_II

UFLA_395 GCPM734 ORPM461 GCPM876 PMGC422 PMGC2797 GCPM2637 PMGC2709 PMGC456 PMGC2088 PMGC2418 GCPM1376 N o va es _2 00 9_ he ig ht1 _1

LG_II

PMGC2709 A3m1K A13K4 A5m4Kr PMGC204 PMGC2088 PMGC2523 P ao lu cc i_ 20 10 _6 K 3_ H eig ht2 _F

LG_II

A18m7P A16m10P A12mP5r A10mP3 A8mP10 A15mP4r PMGC2709 A16m1P A13mP1r PMGC2088 ORPM40 A8mP6r PMGC2523 A9mP7 P ao lu cc i_ 20 10 _1 4P 11 _ C irc um 2_ F

LG_II

0 20 40 60 80 100 120 140 160 180 200 220 240

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Map order: Rae_2009 / Jorge_2010_D / Jorge_2010_T / Novaes_2009 / Paolucci_6K3 / Paolucci_14P11

PMGC2277a PMGC204 PMGC2501 ORPM30 ORPM203 CACAC-26 PMGC2696 R ae _ 20 09 _S LA _6 R ae _2 00 9_ G D E L T A _5 R ae _2 0 09 _c irc um 1_ 5 R a e_ 20 09 _h eig ht1 _ 1

LG_III

E14.700 PMGC2274 E1M7.8 E1M1.2 ORPM30 E3M4.3 N10.1500 E3M1.12 PMGC2611 PMGC2879 E2M2.6 E5M5.3 E2M6.42 bi139327 E1M2.10 bu890808

LG_III

E3M1.5 ORPM30 PMGC2501 J19.700 E2M4.25 PMGC2277 bu890808

LG_III

GCPM3465 GCPM1688 PMGC2481 GCPM1470 GCPM3886 GCPM3365 GCPM1629 UFLA_118 PMGC2611 GCPM3989 GCPM666 PMGC2277 N ov ae s_ 20 09 _c irc um 1_ 1

LG_III

WPMS10 ORPM399 PMGC2481 A15K1r A5m2Kr A12K2 A15K5 A4m6K P ao lu cc i_ 20 10 _6 K 3_ S yll ep 1 _2 P a olu cc i_ 2 01 0_ 6K 3 _H eig ht2 _2

LG_III

A16m8P A21m1Pr PMGC2274 A2m1Pr A19m9P A6m6Pr A1m12P A18m2Pr A21m4P A4m8Pr ORPM30

LG_III

0 20 40 60 80 100 120 140 160 180 200 220

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Map order: Rae_2009 / Jorge_2010_D / Jorge_2010_T / Novaes_2009 / Paolucci_6K3 / Paolucci_14P11

ORPM349 TGRCAG1 AGCGA-N11 ORPM127a CCCAT-18 CACAC-7 TCCGT-N16 PMGC2826 CACTG-5 R ae _ 20 09 _h eig ht1 _5 R a e_ 20 09 _c irc um 1_ 4

LG_IV

E7M4.2 N16.650 E1M2.14 PMGC2235 E2M4.31 Jo rg e _2 01 0_ D _c irc um 2_ 1 Jo rg e_ 20 10 _D _c irc um 1_ 1

LG_IV

E2M4.18 E2M3.6 PMGC2020 ORPM221 E2M6.15 J7.2100 M10.2500 PMGC2881 E2M6.2 ORPM127 PTAG1 E4M2.8 rC6.800 gt18.7 Jo rg e _2 01 0_ T _d elt aH _1 Jo rg e_ 20 10 _T _d e lta C _2 Jo rg e _2 01 0__T _h e ig h t2 _ 1

LG_IV

UFLA_166 ORPM349 GCPM961 GCPM3564 ORPM127 GCPM1809 UFLA_130 ORPM545 GCPM3847

LG_IV

PMGC2826 A19K6 A3m6K A12K5 ORPM221 PMGC2020

LG_IV

ORPM393 A17m9P A21m9Pr A18m9Pr PTAG1 PTR1 T6s1250r A8mP11r A2m2Pr A3m1Pr

LG_IV

0 20 40 60 80 100 120 140 160 180 200 220 240 260

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Map order: Rae_2009 / Jorge_2010_D / Jorge_2010_T / Novaes_2009 / Paolucci_6K3 / Paolucci_14P11

WPMS17 ORPM312 CACAC-N5 PMGC2156 PMGC2840 PMGC2839 WPMS15 R ae _ 20 09 _c irc um 1_ 1 R a e_ 20 09 _G D E LT A _1 R ae _2 00 9_ sy lle p1 _1

LG_V

E4M1.6 PMGC2839 J19.1800 E2M4.9 PMGC2558 PMGC2536 PMGC576 E2M3.9 E4M4.11 E1M3.17 P911 P1327.6 Jo rg e _2 01 0_ D _S LA _2 Jo rg e _2 01 0_ D _c irc um 1_ 2 Jo rg e _2 01 0_ D _c irc um 2_ 2 Jo rg e _2 01 0_ D _h eig ht1 _2 Jo rg e_ 20 10 _D _s yll ep 1_ 2

LG_V

P1327.4 E2M5.31 PMGC2536 PMGC2838 PMGC2156 E2M3.12 E2M5.83 E2M6.10 D20.1600 Jo rg e_ 2 01 0_ T _c irc um 2_ 2 Jo rg e _2 01 0 _T _d e lta C _4

LG_V

WPMS15 PMGC2839 PMGC2840 GCPM2497 PMGC2558 GCPM2985 PMGC2536 PMGC2156 GCPM1063 GCPM3627 GCPM1255

LG_V

A6m10Kr A9m7K A5m13Kr A12K11 A1m5Kr

LG_V

PMGC2839 A7mP2r A1m11P A18m3P WPMS21 A12mP12r A20m7P

LG_V

0 20 40 60 80 100 120 140 160 180 200

(10)

Map order: Rae_2009 / Jorge_2010_D / Jorge_2010_T / Novaes_2009 / Paolucci_6K3 / Paolucci_14P11

CTCAG-2 CCCAT-4 ORPM26 CACAC-42 PMGC2578 CCCAT-N12 PMGC2221 CCCCT-N4 CACAC-40 CACAC-N15 WPMS12 WPMS7 AGCGA-N1 ORPM50 TCCGT-15 CCCCT-N11 ORPM279 R a e_ 20 09 _G D E LT A _2

LG_VI

P1190 E1M8.2 N15.300 Q11.650 PMGC2578 PMGC2217 E4M2.10 E2M2.11 E4M1.11 Q6.250 ORPM190 PMGC2328 E2M4.22 Jo rg e _2 01 0_ D _S LA _3

LG_VI

H5.1600 E1M4.9 E1M8.3 PMGC2423 PMGC2328 PMGC2557 Jo rg e_ 2 01 0_ T _c irc um 1_ 1 Jo rg e_ 20 10 _T _h eig ht1 _1

LG_VI

PMGC2221 UFLA_121 WPMS12 GCPM3600 GCPM2281 GCPM998 ORPM50 UFLA_147

LG_VI

PMGC2556 A11K9 A2m5Kr

LG_VI

A16m5Pr A19m11Pr A2m3P A17m13Pr A18m4Pr A17m2Pr A20m1Pr PMGC2578 WPMS12 ORPM197 A8mP13 PMGC2328 PMGC2556 P ao lu cc i_ 20 10 _1 4P 11 _ S yll ep 1 _2 P a olu cc i_ 20 1 0_ 14 P 11 _C irc um 2_ 1

LG_VI

0 20 40 60 80 100 120 140 160 180 200 220

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Map order: Rae_2009 / Jorge_2010_D / Jorge_2010_T / Novaes_2009 / Paolucci_6K3 / Paolucci_14P11

PMGC2140 WPMS17 PMGC2794 ORPM312 CACTG-19 CCCCT-34 CCCCT-N16 PMGC2730 WPMS16

LG_VII

PMGC2730 R7.1100 GCPM2995 ORPM312 WPMS17 GCPM2741 PMGC2140 R7.1500 E2M4.27 E1M6.8

LG_VII

GCPM350 P1230 H12.1600 GCPM2995 PMGC2794 E5M4.9 E1M8.6 E1M6.2 Jo rg e _2 01 0_ T _G D E LT A _2 Jo rg e _2 01 0_ T _S LA _ 3 Jo rg e_ 20 10 _T _ sy lle p1 _ 2

LG_VII

PMGC607 PMGC2140 GCPM354 UFLA_181 PMGC2794 GCPM3907 GCPM37 WPMS16

LG_VII

A24K3 PMGC562 PMGC607 A15K2r A14K5r PMGC2140 WPMS17 A4m10Kr A18K18 A5m9K P ao lu cc i_ 20 10 _6 K 3_ H e ig h t2 _ 3

LG_VII

PMGC607 A19m2Pr PMGC2140 H2148r WPMS17 A10mP8

LG_VII

0 20 40 60 80 100 120 140 160 180

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Map order: Rae_2009 / Jorge_2010_D / Jorge_2010_T / Novaes_2009 / Paolucci_6K3 / Paolucci_14P11

AGCGA-N8 AGCGA-N2 CTCAG-N7 CTCAG-N9 TCCGT-N13 CCCCT-N1 ORPM202 CCCAT-N1 ORPM127 TCCGT-N14 R ae _2 00 9 _G D E L T A _3 R ae _2 00 9 _s yll ep 1 _2 R a e_ 2 00 9_ S LA _1

LG_VIII

E4M1.3 D5.550 P832 PMGC2607 PMGC2060 E2M2.4 PMGC61 PMGC409 bi139308 E1M7.7 ORPM50

LG_VIII

H17.450 PMGC409 bi139308 P1049 J1.700 ORPM202 K20.1400 O5.1800 E1M2.20 E1M2.19 Jo rg e _2 01 0_ T _ de lta C _ 6

LG_VIII

GCPM2053 ORPM56 ORPM268 ORPM202 GCPM3079 GCPM3858 ORPM386b ORPM414 GCPM2062 GCPM1722 PMGC2598 GCPM3578 GCPM424 GCPM3362 N ov ae s_ 20 09 _c irc um 1_ 2

LG_VIII

ORPM301 A5m3Kr A21K1 A20K3 A22K6 ORPM327 ORPM370 A17K14 A1m4Kr A20K5 PMGC2607

LG_VIII

A11mP10r A8mP3r ORPM269 PMGC204 A6m4Pr ORPM301 A21m3Pr A2m5Pr A20m3Pr ORPM327 A11mP7r A23mP8r A5m5Pr PMGC2607 A5m2Pr A18m1Pr P ao lu cc i_ 2 01 0 _1 4P 11 _S yll ep 1_ 3

LG_VIII

0 20 40 60 80 100 120 140 160 180 200 220 240

(13)

Map order: Rae_2009 / Jorge_2010_D / Jorge_2010_T / Novaes_2009 / Paolucci_6K3 / Paolucci_14P11

AGCGA-N8 AGCGA-N2 CTCAG-N7 CTCAG-N9 TCCGT-N13 CCCCT-N1 ORPM202 CCCAT-N1 ORPM127 TCCGT-N14 R a e_ 20 09 _G D E LT A _3 R ae _2 00 9_ sy lle p1 _2 R a e_ 20 09 _S LA _1

LG_VIII

E4M1.3 D5.550 P832 PMGC2607 PMGC2060 E2M2.4 PMGC61 PMGC409 bi139308 E1M7.7 ORPM50

LG_VIII

H17.450 PMGC409 bi139308 P1049 J1.700 ORPM202 K20.1400 O5.1800 E1M2.20 E1M2.19 Jo rg e_ 2 01 0_ T _d elt aC _ 6

LG_VIII

GCPM2053 ORPM56 ORPM268 ORPM202 GCPM3079 GCPM3858 ORPM386b ORPM414 GCPM2062 GCPM1722 PMGC2598 GCPM3578 GCPM424 GCPM3362 N ov ae s_ 20 09 _c irc um 1_ 2

LG_VIII

ORPM301 A5m3Kr A21K1 A20K3 A22K6 ORPM327 ORPM370 A17K14 A1m4Kr A20K5 PMGC2607

LG_VIII

A11mP10r A8mP3r ORPM269 PMGC204 A6m4Pr ORPM301 A21m3Pr A2m5Pr A20m3Pr ORPM327 A11mP7r A23mP8r A5m5Pr PMGC2607 A5m2Pr A18m1Pr P ao lu cc i_ 20 10 _1 4P 11 _S yll_e p1 _3

LG_VIII

0 20 40 60 80 100 120 140 160 180 200 220 240

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Map order: Rae_2009 / Jorge_2010_D / Jorge_2010_T / Novaes_2009 / Paolucci_6K3 / Paolucci_14P11

PMGC2522 ORPM23 AGCGA-22

LG_IX

E2M3.2 GCPM2871 PMGC2832

LG_IX

E4M4.8 PMGC2832 O20.950 PMGC2522 E5M5.6 L3.1350 K10.1300 Jo rg e_ 2 01 0_ T _c irc um 2_ 1 Jo rg e_ 20 10 _T _ de lta C _3

LG_IX

GCPM3457 GCPM2541 GCPM588 GCPM1623 ORPM21 PMGC2321 GCPM2097 GCPM1949

LG_IX

A21K5r A6m2Kr A1m7K A22K4 ORPM451 P ao lu cc i_ 2 01 0_ 6K 3_ S yll ep 1_ 3

LG_IX

0 20 40 60 80 100 120 140

(15)

Map order: Rae_2009 / Jorge_2010_D / Jorge_2010_T / Novaes_2009 / Paolucci_6K3 / Paolucci_14P11

PMGC2571 CACTG-38 PMGC2887 ORPM149 PMGC2786 R ae _2 00 9 _G D E L T A _4 R a e_ 2 00 9_ cir cu m 1_ 2 R a e_ 2 00 9_ h eig ht 1_ 2 R a e_ 2 00 9_ sy lle p1 _ 3 R a e_ 20 0 9_ S LA _3 LG_X K14.700 Win3 E1M8.11 P1275 E1M8.5 PMGC510 PMGC2855 O20.1200 Jo rg e_ 20 1 0_ D _ he ig ht 1_ 3 Jo rg e _2 0 10 _D _h e ig h t2 _1 LG_X I14.1100 E2M2.5 PMGC2571 PMGC2855 P1055 F14.650 E2M4.4 D5.1050 D3.2100 Jo rg e _2 01 0_ T _ de lta H _ 2 Jo rg e _2 01 0_ T _ G D E LT A _3 LG_X GCPM2107 GCPM507 GCPM2020 GCPM2431 PMGC2855 ORPM345 GCPM2122 GCPM1946 PMGC2786 GCPM938 N ov ae s_ 20 09 _ sy lle p1 _1 LG_X A3m5K PMGC2163 T4800r PMGC510 A19K3 A18K10r A7m9K A3m10Kr A4m13K A21K11 A14K2 A20K1r A22K1 A16K2 LG_X A15mP8 ORPM389 PMGC2855 A18m6Pr A1m13Pr PMGC510 P ao lu cc i_ 2 01 0_ 14 P 11 _C irc um 2 _2 P ao lu cc i_ 20 10 _ 14 P 11 _ H e ig h t2 _2 LG_X 0 20 40 60 80 100 120 140 160 180 200 220

(16)

Map order: Rae_2009 / Jorge_2010_D / Jorge_2010_T / Novaes_2009 / Paolucci_6K3 / Paolucci_14P11

PMGC204.05 PMGC2531 ORPM29 PMGC2392 PMGC204

LG_XI

P1292 E3M4.7 E2M4.1 E2M6.3 E2M3.7 PMGC2011

LG_XI

E2M2.9 E1M6.4 C9.1300 E1M6.9 E4M1.4 PMGC2011 O15.700 SNPT1 E1M8.14

LG_XI

GCPM2951 GCPM2465 PMGC2392 GCPM2562 PMGC2866 ORPM593 GCPM3981 GCPM3037

LG_XI

A13K3 A11K8 A24K5r PTAG2 A12K6 A6m5K

LG_XI

PMGC2531 A17m10Pr A15mP3r A12mP10r A18m12Pr A16m4Pr A16m9Pr

LG_XI

0 20 40 60 80 100 120 140 160

(17)

Map order: Rae_2009 / Jorge_2010_D / Jorge_2010_T / Novaes_2009 / Paolucci_6K3 / Paolucci_14P11

WPMS3 PMGC495 PMGC2885 AGCGA-N3 R ae _2 00 9_ sy lle p1 _4

LG_XII

PMGC2737 WPMS5 E2M4.15 E1M3.5 L3.1200 N14.500 M8.900

LG_XII

PMGC2289 I10.1250 bi138728 E1M3.14 E5M5.4 PMGC2737 Jo rg e_ 2 01 0_ T _c irc um 2_ 4 Jo rg e_ 20 10 _T _d e lta C _7 Jo rg e_ 2 01 0__T _d elt aH _ 3 Jo rg e_ 20 10 _T _h e ig h t2 _3

LG_XII

GCPM26821 PMGC2737 GCPM2643 GCPM2673

LG_XII

A18K1r A12K16r A4m3K PMGC2885 PMGC108 WPMS5 A5m7K A17K1r PTR7R A2m2Kr

LG_XII

A11mP12 A1m4Pr A1m17Pr ORPM210 A1m5P P ao lu cc i_ 20 10 _1 4P 11 _ C irc um 2_ 3 P a olu cc i_ 20 1 0_ 14 P 11 _H eig ht2 _3

LG_XII

0 20 40 60 80 100 120 140 160

(18)

Map order: Rae_2009 / Jorge_2010_D / Jorge_2010_T / Novaes_2009 / Paolucci_6K3 / Paolucci_14P11

AGCTG-N13 PMGC14 CACAC-N25 CACAC-49 CCCCT-N3 ORPM16 CACAC-51 CACAC-50 AGCGA-11 AGCGA-N5 PMGC2658 CCCTC-13 CACAC-33 CCCTC-12 AGCGA-31 CTCAG-31 PMGC649 PMGC2420 ORPM417 CCCTT-N2 PMGC2277 CCCTT-23 CACAC-N1 R a e_ 2 00 9_ cir cu m 1_ 3 R ae _ 20 09 _ S LA _4 R ae _ 20 09 _ sy lle p1 _5 R ae _2 00 9 _h eig ht1 _3

LG_XIII

PMGC14 bu810400 E5M5.2 E2M3.11 ORPM16 bu818855 ORPM417 PMGC2658

LG_XIII

PMGC14 bu810400 Q13.650 E2M5.2 PMGC2599 bu818855 E2M4.2 F14.1400 PMGC649 bi128189 Jo rg e_ 20 10 _ T _h eig ht 2_ 4 Jo rg e_ 20 10 _ T _d elt aH _4 Jo rg e _2 0 10 _T _S LA _4

LG_XIII

PMGC14 GCPM3990 WPMS22 PMGC2658 GCPM2577 PMGC2847 GCPM2218

LG_XIII

PMGC14 A18K8 A7m5Kr A3m8K A10K2 A8m10Kr A12K4r A24K8 A5m6K A3m7Kr PMGC2699 PMGC2847 PMGC2420 A11K5r ai164591r P ao lu cc i_ 2 01 0_ 6 K 3_ C irc u m 2 _2

LG_XIII

A11mP9r A10mP5 ORPM55 A15mP7r A23mP4 A19m1P bu814260

LG_XIII

0 20 40 60 80 100 120 140 160 180 200 220

(19)

Map order: Rae_2009 / Jorge_2010_D / Jorge_2010_T / Novaes_2009 / Paolucci_6K3 / Paolucci_14P11

CACTG-25 CCCTC-4 PMGC2515 CACAC-1 PMGC571 R ae _ 20 09 _ S LA _5 R a e_ 2 00 9_ sy lle p1 _6

LG_XIV

bu810907 E2M6.17 E2M6.16 ORPM133 GCPM1377 ORPM193 CHS P800 rDNA E3M4.6 E1M5.1 Jo rg e _2 01 0 _D _d elt aC _2 Jo rg e _2 01 0 _D _c irc um 2_ 3

LG_XIV

Q13.800 bu810907 P7.850 PMGC420 PMGC2055 GCPM1292 E2M4.30 PMGC571 P1148 ai164591 E2M4.28 Jo rg e_ 20 10 _ T _h eig h t1 _2

LG_XIV

GCPM1866 UFLA_181 ORPM59 GCPM1177 GCPM1564 GCPM1292 GCPM2080 ORPM386a GCPM2014 PMGC2515 GCPM674

LG_XIV

A8m12Kr A21K6 GCPM7481 A12K8r A5m14K PMGC204

LG_XIV

T4s650 A4m7Pr A10mP1r A6m3P A19m10P A1m6Pr A20m6Pr A18m11P A6m5P PMGC571 A22m4Pr A5m12Pr GCPM7481 A7mP6 P ao lu cc i_ 2 01 0 _1 4P 1 1_ H e ig h t2 _ 4

LG_XIV

0 20 40 60 80 100 120 140 160 180 200 220 240

(20)

Map order: Rae_2009 / Jorge_2010_D / Jorge_2010_T / Novaes_2009 / Paolucci_6K3 / Paolucci_14P11

CCCAT-21 ORPM430 CACAC-48 PMGC520 CACAC-N24 PMGC2585 R ae _2 0 09 _h eig h t1 _ 4

LG_XV

PMGC520 PMGC2679 E1M2.9

LG_XV

E2M5.52 PMGC690 H20.1300 PMGC2679 E4M2.5 E1M5.2 H14.550 ORPM430 PMGC2585

LG_XV

GCPM1454 UFLA_728 UFLA_122 GCPM1245 GCPM4047 PMGC520 PMGC2585 GCPM3333

LG_XV

ORPM438 A18K15 A2m1Kr

LG_XV

PMGC2679 A17m6P A16m2P

LG_XV

0 20 40 60 80 100 120 140 160 180 200

(21)

Map order: Rae_2009 / Jorge_2010_D / Jorge_2010_T / Novaes_2009 / Paolucci_6K3 / Paolucci_14P11

CCCCT-26 CCCCT-25 ORPM64 PMGC2804 CCCTT-N7TCCGT-1 AGCTG-N6 CACTG-9 CACTG-7 CCCCT-31 CTCAG-30 CTCAG-N20 TCCGT-14 PMGC204

LG_XVI

E5M5.1 C19.950 ORPM64 H1.1300 PMGC433 E1M4.2 E1M5.3 PAL F6.1500 G10.1100 Jo rg e _2 01 0 _D _d elt aC _ 3 Jo rg e_ 20 10 _ D _d e lta H _ 2 Jo rg e _2 01 0 _D _h eig ht 2_ 2

LG_XVI

N4.1200 Q1.700 GCPM598 PAL Jo rg e _2 01 0 _T _ cir cu m 2 _5 Jo rg e_ 20 10 _ T _S L A _5

LG_XVI

GCPM3724 GCPM1293 PMGC2804 GCPM3141 PMGC433 PMGC2143 GCPM3261 ORPM533GCPM1532

LG_XVI

GCPM14181 A7m2K A12K14 A7m6K A11K12r A16K6 PMGC433

LG_XVI

GCPM5981 A16m12P A14mP1r A5m16P A4m9Pr A4m6P A24m3Pr

LG_XVI

0 20 40 60 80 100 120 140

(22)

Map order: Rae_2009 / Jorge_2010_D / Jorge_2010_T / Novaes_2009 / Paolucci_6K3 / Paolucci_14P11

CACAC-16 CACAC-28 TCCGT-N19 CTCAG-N8 ORPM15 PMGC2889 PMGC2030

LG_XVII

PMGC2832 PMGC2889 E2M4.32 E4M4.5 E1M2.2 E4M1.2 E2M5.3

LG_XVII

J10.500 E5M4.8 PMGC2889 Jo rg e_ 20 10 _T _ he ig ht2 _5 Jo rg e_ 20 10 _T _d e lta H _5

LG_XVII

UFLA_170 GCPM125 GCPM880 GCPM641 PMGC648 GCPM3580

LG_XVII

A7m8Kr A21K9r A23K3r A2m6K A12K9 GCPM641 A5m5Kr A19K7 A2m4K PMGC648 A1m1K

LG_XVII

H2220r A23mP6r A18m5P A15mP2 A18m15Pr A8mP9r GCPM641 A9mP3r A21m2P A11mP2r P ao lu cc i_ 20 1 0_ 14 P 11 _C irc u m 2 _4

LG_XVII

0 20 40 60 80 100 120 140 160 180

(23)

Map order: Rae_2009 / Novaes_2009 / Paolucci_6K3 / Paolucci_14P11

PMGC2862 PMGC2525 PMGC2880 CCCTC-1 CCCTC-21 AGCGA-26 ORPM28 AGCGA-N9 CCCTT-5

LG_XVIII

GCPM1089 GCPM1244 GCPM1743 ORPM534

LG_XVIII

ORPM6 bu885452 A11K4 P ao lu cc i_ 20 1 0_ 6K 3_ H e ig ht2 _4

LG_XVIII

A7mP3r A5m4P A14mP4 A6m1Pr A3m5Pr A19m3P A19m6P ORPM6 A10mP2r

LG_XVIII

0 20 40 60 80 100

(24)

Map order: Rae_2009 / Jorge_2010_D / Jorge_2010_T / Novaes_2009 / Paolucci_6K3 / Paolucci_14P11

CACTG-14 ORPM276 ORPM277 AGCGA-19 ORPM206 CACAC-17 AGCTG-25

LG_XIX

E1M2.4 P1221 E1M7.6 E7M6.4 E2M4.8 E7M6.8 E1M2.8 Pop26 ORPM277 INRA7 GCPM107 ORPM263 Mer

LG_XIX

GCPM107 E6M51.1 PMGC667 E4M2.7 GCPM2319 LRR68_K1 NewPop9 Rus E5M5.7 GCPM79

LG_XIX

ORPM277 GCPM79 GCPM249 GCPM2319 ORPM206 GCPM1278 ORPM597 ORPM536

LG_XIX

PMGC2803 A6m7Kr A22K3 A17K10r A8m6Kr PMGC204 PMGC14 A22K8 ORPM433 A18K17 A5m10K A4m9K A24K1r P ao lu cc i_ 2 01 0_ 6 K 3_ S yll ep 1_ 4

LG_XIX

PTR15 ORPM263 ORPM276 PMGC2803 A21m7Pr A15mP9 A17m12P A11mP5 A19m4P SEX T2s2200r ORPM432 A17m16Pr A5m15Pr A14mP2 A4m2P

LG_XIX

0 20 40 60 80 100 120 140 160 180 200

(25)