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Genetic variability organisation and gene flow in natural
populations of Medicago polymorpha L. prospected in
Tunisia
Amel Salhi Hannachi, Mohamed Boussaid, Mohamed Marrakchi
To cite this version:
Original
article
Genetic
variability organisation
and
gene
flow in natural
populations
of
Medicago polymorpha
L.
prospected
in Tunisia
Amel Salhi
Hannachi
Mohamed Boussaid
Mohamed Marrakchi
!
Laboratoire de
génétique
et debiologie moléculaire,
faculté des sciences deTunis,
campus universitaire 1060,
Tunis,
TunisiaInstitut
national des sciencesappliquées
et detechnologie,
Tunis, TunisiaAbstract - Sixteen accessions of Tunisian
germplasm
ofMedicago polymorpha
L. werecharacterised
using enzymatic
markers toidentify
usefulphytogenetic
resources fortheir
integration
in programmes ofsafeguard
and conservation. Protein extracts frompopulations
of thisspecies
wereanalysed by electrophoresis
to estimateisoenzyme
variation. Two enzymatic systems
providing
six alleles were chosen from six systems tested. From statistical treatments, it appears that a considerable variation was foundbetween accessions,
indicating
aninteresting genetic potential
for selection. Such aresult
(50
% of the total variation due topopulation
differentiation)
is in accordancewith the
strictly
autogamous system ofreproduction
in this taxon.Isozyme
datasuggest that the level of gene flow between
populations
of M.polymorpha
is verylow.
Additionally, genetic
drift may beresponsible
for strongamong-population
differentiation. It seems that the
genotypic
structure of naturalpopulations,
as seenfrom
isoenzymatic markers,
is not affectedby
thegeographic
parameters(distance
and
altitude).
Thus, these markers are ofpractical
interest in thebackground
selectionand
improvement
programmes. ©
Inra/Elsevier,
ParisMedicago
/
genetic variability/
isoenzyme / gene flow/
germplasm conservation Résumé - Organisation de la variabilité génétique dans les populations naturelles de Medicago polymorpha L. Pour identifier les ressourcesphytogénétiques
utileset leur
intégration
dans des programmes desauvegarde
et de conservation, seize accessions degermoplasm
Tunisien deMedicago polymorpha
L., sont caractériséespour leur diversité enzymatique. Les extraits
protéiques
des populations de cetteespèce
sontanalysés
parélectrophorèse
pour estimer la variationisoenzymatique.
Deux
systèmes enzymatiques
révélant six allèles ont été retenus,parmi
les six*
systèmes
testés parélectrophorèse
surgel d’amidon,
pour leurprofil électrophorétique
polymorphe.
Lesanalyses statistiques
ont montré une importante variabilité entre lespopulations
étudiéesindiquant
unpotentiel génétique
intéressant pour la sélection.L’hétérogénéité interpopulation
est élevée, un tel résultat est en accord avec lesystème
de
reproduction
strictement autogame de ce taxon. Les donnéesisoenzymatiques
suggèrent
que le fluxgénique
entre lespopulations
de cetteespèce
est faible. La dérivegénétique
est sans douteresponsable
de la différenciation entre lespopulations.
Parailleurs,
aucunparamètre éco-géographique
(distance
etaltitude)
ne semble influencer leur structurationgénotypique.
Les marqueursisoenzymatiques
ainsi révélés sont trèsutiles dans des schémas de sélection pour une meilleure efficacité d’amélioration.
©
Inra/Elsevier,
ParisMedicago
/
variabilité génétique/
isoenzyme/
flux génique/
germoplasm / conservation1. INTRODUCTION
In
Tunisia,
in the last 10 years, thepreservation
ofplant genetic
resources has been ofprime
concern for wildforage
andpastoral legumes
becausethey
havebeen
subject
to severegenetic
erosion.Indeed,
the localgenetic
resources have beendamaged by
the reduction of range land andovergrazing; pastoral
spacesare
relegated
to thedry
areas of thecountry
dominatedby irregular
rainfall. The results of the erosion factors have been thedegradation
and rarefaction of the nativeflora,
and thedisruption
ofequilibrium
betweenever-increasing
livestockrequirements
and limited resources.Species
ofMedicago
andespecially
the annualspecies
can be used to valorise and enhance resources. The annualspecies
ofMedicago
constitute anextremely
diversifiedphytogenetic
patrimony.
By
theirintegration
intoley-farming, they
canplay
animportant
role in cropproduction
increase.They
are also able toimprove
pastoral production
in semi-arid areas.Medicago
isrecognised
as one of the mostimportant
genera ofpasture
plants
in the world. The Mediterranean basin is the centre of theorigin
ofMedicago species
and includes the world’sgreatest
variability
(Heyn, 1963).
Conscious of the value of these
plants,
we initiated alarge
researchpro-gramme in order to introduce them to fallow and
marginal pastoral
zones. The aim of this work is:1)
to build aninventory
of localMedicago
species
and toacquire
great
genetic diversity
through
a collection of accessions ofMedicago
species
and2)
to evaluategenetically
thephytogenetic
resourcesusing
mor-phological
andphysiological
traits as well as biomolecular tools. Selection andimprovement
programmes are based on the search forgenetic
markers. Iso-enzymeselectrophoresis
is a useful tool for this purpose. Thegenetic
resources assessedby
moleculartechniques
must be considered in conservationstrategies.
We usedenzymatic
markers to characteriseMedicago polymorpha.
Thisapproach
has beenwidely
used inelucidating
thegenetic
structure ofMedicago
species
(Brunel,
1979;
McCoy
etal., 1991;
Kiss etal., 1993;
Bullita etal., 1994;
Fayed-Lameche
etal., 1996;
Salhi Hannachi etal.,
1997).
Medicago polymorpha
L. syn.Medicago hispida Gaertn.,
the annualspecies,
belongs
to the sectionSpirocarpos
of theMedicago
genus. It isautogamous
variety
of habitats. Theubiquitous
andpolyvalent
nature of M.polymorpha
should be noted(Prosperi
etal.,
1996).
Theirspiny
pods
are one of the characteristicsfavouring
their invasionability;
suchpods
hook ontosheep
wool andhay
(Coks
etal.,
1980).
According
toHeyn
(1963),
three botanical varieties should berecognised:
brevispina, polymorpha
andvulgaris.
Several cultivars of thisspecies
are com-mercialised in Australia. The most common are ‘circlevalley’,
’serena’ and’santiago’.
These Australian selected varieties are not welladapted
to the en-vironmental conditions of North Africa andEurope
(Olea
etal.,
1989;
Bullitaet
al.,
1994).
Observations of M.
polymorpha
at natural sites show that it is welladapted
to neutral and
slightly
acid soils(Reid
etal.,
1989).
Itsgeographical
distribution would indicate apreference
for the upper semi-arid bioclimaticstage
(Abdelkefi
et
al.,
1990, 1992,
1996).
M.polymorpha
isequally adapted
to areas in which the altitude ranges from 10 to 900 m and rainfall from 100 to 800 mm.In the
present
study,
weinvestigated
thegenetic
diversity by
means ofisozyme
markers.2. MATERIALS AND METHODS
2.1. Plant material
Isoenzymatic
variation wasanalysed
in 16spontaneous
populations
of M.polymorpha,
collected from a wide range of climatic andedaphic
condi-tions in 1990(Abdelkefi
etal.,
1990,
1992).
The distribution map(figure 1)
shows that this
species
covers a range of bioclimaticstages
ranging
from the humid to the upper arid. Seedsrandomly
selected from eachpopulation
weregerminated,
and theplants
were grown under uniform conditions(25
°C and 12-hday
length).
2.2. Protein extraction
Electrophoresis
procedures
have been describedby
Salanoubat(1983)
and Baatout et al.(1990).
For everysample,
50 mg of young leaves wereground
in200
vL
of extraction sodium ascorbate buffer(pH 8.4)
comprising
4.15 mg of sodiumascorbate,
8.35 mg of D sucrose and 35wL
of2-beta-mercaptoethanol
at 4 ° C. The
homogenate
wascentrifuged
at 13 000 rpm for 2 min.2.3.
Electrophoretic
procedures
The six
enzymatic
systems
(table !
wereelectrophoresed
in 13%
horizontal starchgels.
Twenty-four
wicks of Whatman 3 MMchromatography
paper were moistened with theprotein
extracts and inserted into slits in thegel.
Migration
was anodic and conducted under 50 mA for 6 h at 4 °C in the extraction buffer and at constant power(16 W).
Procedures forstaining
enzymeactivity
were as in Brunel(1979),
Stuber and Goodman(1980),
Cardy
et al.2.4. Data
analysis
The bands of each zymogram were
interpreted
in terms of loci and alleles. Allelicfrequencies
were used to describe the distribution ofgenetic
variation within and betweenpopulations
and to estimate the gene flow among popu-lations. Theseparameters
were estimated fromWright’s
F-statistics(Wright,
Fst measures
degree
ofbetween-population
differentiation;
Fis measureswithin-population variability.
Apositive
value of Fis indicates a deficit inhet-erozygotes
incomparison
with theHardy-Weinberg
equilibrium expectations.
Fst is
widely
used to estimate thedegree
of subdivision betweenpopulations.
Moreover,
thestrengths
of gene flow and random drift can be assessed from theformula Nm =
1/4 (1/Fst - 1),
where N is the effective size of apopulation
and m is the rate of
migration
(Wright, 1969).
Geographical
distances betweenpopulations
have been measured on a map,except
when a barrier tomigration
waspresent
(e.g.
MediterraneanSea).
Isolationby
distance was estimatedaccording
to Slatkin(1993).
The
linkage disequilibrium
betweenpairs
of loci was estimated for eachpop-ulation
using
the correlation coefficient(Weir, 1990).
Either selection pressuresor
genetic
driftacting
onpairs
of loci canproduce
alinkage disequilibrium
among two alleles. To
distinguish
between the two cases,gametic
associations of the whole data set Dst weredecomposed
into four coefficients which show theparts
created withinpopulations concerning
Dis and D’is indices andbe-tween
populations
with Dst and D’st coefficients.According
to Ohta(1982),
thecomparison
of Dis and Dstvalues,
on the onehand,
and of D’is and D’stvalues,
on theother,
allows the two situations to be differentiated.The F-statistics were calculated
using
GENEPOP(version
1.2)
software(Raymond
andRousset,
1995).
The overallsignificance
of tests for each locuswas estimated
by
Fisher’s combinedprobability
test(Fisher, 1970).
3. RESULTS
3.1. Genetic
interpretation
Allelic
frequencies
at the threepolymorphic
locianalysed
arereported
in table IL A total of six alleles were identified in all loci. Four enzymes appear3.1.1. Glutamate oxaloacetate transaminase
(GOT)
Two
staining regions
areapparent
for this enzyme. Eachregion
exhibitsthree
patterns:
atriple-banded
pattern
corresponding
toheterozygotes
andtwo
single-banded
homozygotes
for diallelic lociGOT2A,
GO T2B andGOTI C,
GOT1D.
Enzymes
GOTI and GOT2 are thus dimeric. Interlocus interaction isnot
apparent
(figure !) .
3.1.2. Isocitrate
dehydrogenase
(ICD)
Only
one genecoding
for this enzyme has been detected in M.polymorpha.
This gene appears to bepolymorphic
and biallelic(ICDIA, ICD1B).
The ICDisozymes
(figure 2)
produced
zymograms with one or threebands, suggesting
that those with one band were
homozygote phenotypes,
and those with three bandsheterozygotes.
Only
onemonomorphic
zone of enzymeactivity
with asingle
band for LAP(monomeric
enzyme)
and PGI(dimeric enzyme)
was stained. Twomonomor-phic
bands were detected in allpopulations
for PGM(monomeric system)
and 6-PGD(dimeric protein) (figure 2).
The rare
heterozygote
individuals detectedby electrophoresis prompted
us to use allelicfrequency
to test theautogamous
reproduction
system
of M.polymorpha
using
the Fisparameter
(table 111).
This test showed that thepopulations
studied were notpanmictic.
The observedheterozygosity deficiency
confirms theautogamous
nature of thesystem
ofreproduction
but with the occurrence of a residualallogamy.
The averageheterozygosity
was 0 to 0.055%
3.2.
Population
differentiationThe distribution of
genetic
variation within and among the 16populations,
using F-statistics,
showedhigh
genetic interpopulational
differentiation. The overall differentiation amongpopulations
washighly significant
(P
<10-
5
)
andcorresponded
to an Fst value of 0.49(table Il!,
indicating significant
genetic
heterogeneity
between thepopulations
studied.GOTI,
GOT! and ICDl loci contributed to the distinction betweenpopu-lations
by
FST values of0.68,
0.34 and0.56,
respectively
(table T!.
3.3. Statistical
linkage disequilibrium
among lociGenotypic
association amongpairs
of loci was estimated from correlationcoefficients. Estimate of
linkage disequilibrium
wasonly significant
for the association ofGOT! ICD1,
in the(TAI)
Tabarkapopulation
(P
<10-‘’)
(table VI).
Linkage disequilibrium
between loci forpooled populations
(table VII)
indicatedpreferential
association orlinkage
between G’OT’!-7C*737(P
<0.05)
andindependence
between GOTI-GOT2 and GOTI-ICD1associ-ations
(table VI!.
The
analysis
of the Ohta indices(table
VII!
supports
thehypothesis
that thegametic
associations wereonly
due to the action ofdrift,
except
for combination of thepair
GOT2-ICDI. Ohta indices arepresented
for bothpopulations
in table VIII.Comparison
ofD
IS
andD
ST
,
on the onehand,
andof
D’
s
andDS
T
,
on theother,
shows that in M.pol!!norpha
thedisequilibrium
between the locipairs
was notsystematic
and createdby
genetic
drift in each3.4.
Population dynamics
3.4.1. Gene flow
Wright
(1951)
showed that Fst is related to the level of gene flow. The Fst of 0.498 leads to a low value of Nm = 0.26(Nm
<1),
suggesting
a low levelof gene flow among
populations.
3.4.2. Isolation
by
distanceThe distinct
ecogeographic
origins
of studied accessions of M.polymorpha
were used to
identify
whether environmental factors areresponsible
for theallozyme
variation.Additionally,
gene flow wasanalysed
in relation togeo-graphical
distancesaccording
to the Slatkin method founded onslope sign
ofregression
between Nm and distance of alog.
base(Slatkin,
1985, 1993;
Chevil-lon etal.,
1995 a,b).
Computing
of correlation between Nm and distance shows that theslope
ofregression
was near zero(figure 3).
Another correlation coefficient was calculated between Fst andgeographical
distance(Pasteur
etal.,
1995),
andagain slope
was weak(0.069)
andregression
notsignificant
(P
= 0.313 >0.05)
Structuration of
genetic diversity
wasanalysed
in relation to the altitude of sites colonisedby
M.polymorpha.
Three groups ofpopulations
were defined: group I:populations
from low altitude(from
10 to 80m);
group II:populations
colonising
stations from 100 to 500 m; and group III:populations
native athigh
altitude
(from
650 to 900m).
Table IX shows a differentiation among
populations,
estimatedby
Fst. The differentiation within each group wasstronger
than the differentiation between groups(Fst
withingroups > Fst
amonggroups).
Altitude did not affect thestructuration of the
genotypes
studied.4. DISCUSSION AND CONCLUSION
Previous work showed that in M.
polymorpha
natural accessions ahigh
level ofphenotypic diversity
exists amongpopulations.
Thevariability
range seemedto be continuous over the
prospected
area. Parameters ofprecocity, vegetative
development
and seedproduction
contribute to the distribution ofphenotypic
of
populations
and the level of gene flow among them. In thisstudy,
weinvestigated
genetic
variability
using
severalenzymatic
systems.
Among
the sixsystems
tested,
two(GOT
andICD)
were retained. These twosystems
deliveredsix alleles and were used to estimate the gene flow between
populations,
togive
information on the
organisation
ofgenetic diversity.
The
genetic
variationoccurring
within M.polymorpha
isorganised
withhigh
levels of differentiation betweenpopulations.
According
to Hamrick and Godt(1990),
species
that haveselfing
or mixedmating
systems
have lower levels ofgenetic variability
thanpredominantly
outcrossedspecies,
and 51%
of their totalgenetic
diversity
isapportioned
betweenpopulations
incomparison
to10
%
for outcrossedspecies.
Our results on M.polymorpha
agree with thesegeneralisations
(50
%
of the totaldivergence
is attributable to the differenti-ation amongpopulations).
Indeed,
the level ofvariability
between altitudinalgroups is
significantly
lower than that betweenpopulations
within groups. Thehigh
levels ofautogamy
in thisspecies
result in astrong pattern
ofamong-population genetic
differentiation. Distribution ofgenetic variability
and theextent of gene flow between
populations
areimportant
for theunderstanding
ofgenetic
evolution. Thedegree
ofamong-population
differentiation is affectedby
the rate at which genes are carried betweenpopulations by
themigration
ofpollen
or seeds. The Fst of 0.498 leads to Nm =0.26, suggesting
a lowgene flow among
populations.
This could be due to thehigh
levels of auto-gamy in M.polymorpha.
Genetic drift and selection could also result instrong
among-population
differentiation(Nm
<1).
That selection occurs issuggested
with a
high dispersal
of seeds(Hamrick
andGodt,
1990).
In M.polymorpha,
easy seed
dispersal
does notprevent
isolation ofpopulations.
This is confirmedby
the noncorrelation between Nm andgeographic
distancesseparating
pop-ulations.
Genotypic
structure is not affectedby
environmental factors such as distance and altitude. M.polymorpha
isinteresting
because of itsability
toadapt
to difficult soils and climates. The survey and collection of thegenetic
resources of this
species
must beincorporated
into conservationstrategies.
To establish a gene bank we need to know how thegenetic variability
isorganised
in the
species.
In-situ gene banks have been used inSyria
and in Iran to select the M.polymorpha variety
(Cocks
etal.,
1986;
Nazari-Dashlibrown andFran-cis,
1988).
The conservationstrategies
were fundamental to thedevelopment
of successful mixtures of M.polymorpha
forley-farming
systems
in Tunisia.ACKNOWLEDGEMENTS
The authors would like to thank Dr. Nicole Pasteur from
Montpellier
IIUniversity
for
helpful
discussions and statistical assistance. The authors are alsograteful
toDr. Hamouda Hemissi from the
Faculty
of Sciences of Tunis forcorrecting
theEnglish
version of thismanuscript.
Support
for this research wasprovided by
grants from the ’Minist6re deI’Enseigne-ment
Superieur’,
the ’Secretariatd’Etat
a la RechercheScientifique
et a laTechnolo-gie’,
theCNRS,
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