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Chromosome 1 Chromosome 2

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Chromosome 1

Chromosome 2

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Chromosome 4

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Chromosome 5

Chromosome 6

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Chromosome 8

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Chromosome 9

Chromosome 10

Supplementary Figure S2. Alignment of A and B genomes. Scaffolds were ordered by mapping to sorghum to individual sorghum chromosomes and were then sorted into an A and a B genome by to avoid overlap. A dotplot shows the correspondence between the A and B genomes.

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