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B

iot

ic

methane

ox

idat

ion

w

ith

in

an

instrumented

exper

imenta

l

1

landf

i

l

l

cover

2 3 4

Louis-B. Jugnia1*, Alexandre R. Cabral2, S. Aït-Benichou2 and Charles W. Greer1 5

6 7

1Biotechnology Research Institute, National Research Council of Canada, 6100,

8

Royalmount Ave., Montreal, Quebec, Canada, H4P 2R2 9

2Department of Civil Engineering, Universi de Sherbrooke, 2500, boul. del'Universi,

10

Sherbrooke, Quebec, Canada, J1K 2R1 11 12 13 14 15 16 17

Key words: Methanotrophs,landfill cover soil,methane, compost, methane oxidation 18

19 20 21 22

Running title: Methane oxidation within an experimentallandfill cover 23 24 25 26 27 28

*Corresponding author

29

Phone: + 1 (514) 496 0714 30

Fax : + 1 (514) 496 6265 31

Email: louis.jugnia@cnrc-nrc.gc.ca 32

Jugnia, L. B.#, Cabral, A.R., Greer, C.W. # (2008). Biotic methane oxidation within aninstrumented experimentallandfill cover. Ecological Engineering, 33(2): 102-109.

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Abstract 1

An experimentallandfill cover composed of a mixture ofsand and compost was 2

installed at the St-Nicéphore landfill in Québec (Canada). The mixture was evaluated as 3

potential substrateto promote methane (CH4) oxidation by methanotrophic bacteria. One

4

ofthe objectives ofthis field project wasto assessthe efficiency ofthe coverin reducing 5

CH4emissions. Forthis, both CH4abatementandtheextentto which methanotrophic

6

bacteria developed werefollowed overtime and space in relation to environmental and 7

physico-chemical variables. Theresults obtained duringthefirst year of monitoring 8

indicatedthat precipitationandairtemperature hada greatimpact on CH4 oxidation.

9

Overthestudy period, different patternsin CH4oxidationthroughthecoversoil were

10

observed;in certain cases, oxidation was observed at various depths, althoughthe zone of 11

optimum oxidation occurred mostly nearthe surface. However,inthe second half ofthis 12

first year of monitoring, almost no oxidation was observed at depths greater than 10 cm, 13

presumably because of lack of oxygen reaching deeper zones within the cover. In the 0-14

10 cm zone high numbers and important variations of particulate methane 15

monooxygenase gene (pmoA) copy number and counts of methanotrophic bacteriawere 16

also observed. It is concluded that the adopted substrate has proved to be satisfactory in 17

sustaining and promoting growth of methanotrophic bacteria. However,the water content 18

of the soil seems to be a key factor influencing CH4 oxidation, to an extent that requires

19

further investigation. The uppermost 0–10 cm layer seems to play a critical role in CH4

20

abatement; one important challenge will be to explore this in more detail by conducting 21

more measurements withinthis zone. 22

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Introduction 1

Methane (CH4) is a potent greenhouse gas. It absorbs infrared radiation more

2

effectivelythan CO2 (Crutzen, 1991) andits atmosphericconcentrationisincreasing at a

3

rate of 0.6% per year(IPCC, 2001). This increase has beenlinkedto globalclimate 4

change.Itis nowestimated thatas muchas 70% of CH4emissionsare dueto human

5

activities,andas muchas 19% oftheincreasecan beattributedtolandfillemissions 6

(IPCC, 2001). Therefore, management practices thatcould helpreduceemissionsfrom 7

landfillsare of greatimportancein connection withtheatmospheric CH4 budget. Gas

8

extraction systems, which are now widely adoptedinthe developed world, are considered 9

the principal means ofachieving suchreductions. However, CH4reductioncanalso be

10

regulated by methanotrophic bacteriathat developintheaerobic zone ofthelandfill 11

cover. Itis well establishedthat methanotrophs are capable of efficiently converting CH4

12

to CO2 and biomass (Conrad, 1996). If atechnology – and a methodology -is developed

13

to harnessthisability of methanotrophs,itcould beappliedtoimprove CH4emission

14

abatement from landfills. However, the quantitative significance of the reduction, which 15

depends ontheavailability of CH4(Pawlowskaand Stepniewski, 2006),as wellas on

16

several environmental factors, needs to be determinedinthe field. 17

Composted organics promote good microbial growth and appearto make an effective 18

mediumforlandfillcover(Humerand Lechner, 2001),asit offersa good mixture of 19

porosity, water holding capacity, pH, and nutrient supply (Hilger and Humer, 2003). Both 20

field observations at landfills and results from laboratory studies have demonstrated that 21

organiccoversoils havea highcapacityto mitigate CH4emissions(Borjessonetal.,

22

1998b; Humer and Lechner, 2001), and the CH4 oxidation potential in mineral soils can

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be enhanced by adding organic material, e.g. sewage sludge (Kightley et al., 1995) and 1

compost (Humer and Lechner, 2001; Barlaz et al., 2004; Maurice and Lagerkvist, 2004). 2

Research so farindicatesthat compost should be capable of oxidizing CH4 at ratestwoto

3

threetimes higherthanthat of mineralsoils(Wilshusenetal., 2004). However, use of 4

compost alone, or other high organic contents material may not constitute anideal 5

substrate:the materialcan undergosignificantcompaction overtimeandcan become 6

easily saturated, causing a reduction in oxygen diffusion into the cover to promote CH4

7

oxidation. 8

It seemslogicalthat alandfill cover could be designedto promote optimum growth of 9

methane oxidizing bacteria and thus enhance biological oxidation of CH4. Various

10

landfill covers or biofilter designs, using different configurations and substrates to 11

support growth of methanotrophs have been evaluatedelsewhere (Hilgerand Humer, 12

2003; Gebert and Groengroeft, 2006). However, results from efficiency tests under field 13

conditions are mostly available for covers or biofilters working under temperate climatic 14

conditions. Tothe best of our knowledge, no such attemptshave been made so far under 15

thecold Nordicconditions. Thistype ofcover,referredto hereasa passive methane 16

oxidation barriers (PMOB), might provide an alternative method of emission abatement 17

for oldsites, whereflaring or energyrecoveryis not economicallyfeasible, or as a 18

complementary strategy to gas collection systems. Indeed, it has been reported that even 19

atsites with gascollectionsystems,significantamounts of biogascanstillescapeas 20

fugitive emissions (e.g. Spokas et al., 2006; Börjesson et al., 2007). In order to evaluate 21

the potential of PMOBin Nordic climatic conditions,this multidisciplinary project 22

consideredthe geotechnical, hydraulic, physico-chemical,environmental,climaticand 23

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microbiological aspects in assessing the efficiency of landfill cover materials that would 1

act as a PMOB. Some oftheseissues are addressed herein. 2

Within the framework of this multidisciplinary project, 3 PMOBs were designed and 3

constructed at the St-Nicéphore landfill, Quebec, Canada, a waste disposal facility 4

covering approximately 65 hectaresthatreceives mainly domestic waste. The cover 5

includesalayerconstituted ofa mix ofcompostandsandassubstrate. Both methane 6

abatement through the designed PMOB and the extent to which methanotrophic bacteria 7

developedinresponsetotheflow of CH4werefollowed overtimeandspaceandin

8

relation to environmental and physico-chemical variables. This paper reports the results 9

obtained overthe first year of monitoring. 10

11

Material and methods 12

Description of the field experimental plots 13

Three experimental plots measuring 2.75 m(W) x 9.75 m(L) were constructed 14

during the summer of 2006. Each of the plots included an 80-cm thick layer of substrate 15

underlain by a 10-cmthicktransitionallayer consisting of 6.4-mm net gravel and a 20-cm 16

thick gas distribution layer (GDL) consisting of 12.7-mm net gravel. In this paper, only 17

details pertaining to one of the plots, PMOB-1, are presented. This plot was fed directly 18

by biogas coming fromthe 3.5-year old buried waste mass (Figure 1). Giventhe factthat 19

the substrate layer thickness was fixed at 80-cm, a 200-cm thick GDL was necessary in 20

orderto reachthe waste mass, atthis particularlocation ofthelandfill. 21

The substratelayer consists of a mixture of sand and compost, composed of 5 22

volumes of compost (before sieving) and 1 volume of coarse sand (D10 = 0.07 mm; D85 =

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0.8 mm; Cu= 4.3). The 2-year old compost, was provided by alocal producerthat 1

composted a mix of municipal sewage sludge and sludge from pulp and paper and agr i-2

foodindustries. Thesand-compost mixture was sieved usinganindustrial meshsothat 3

the end product would contain particles no greaterthan 12 mm. The organic matter 4

content of the mixture was 17.8% (g_volatile matter/g_dry soil). Respirometry tests were

5

performedaccordingtothe BNQ 0413-205-art 9.5standard(BNQ, 1997) on duplicate 6

samples ofthe mixture. The following results were obtained: 268 and 230 mgO2/kg.v.s.h

-7

1.

8

The substrate layer was placed in four 20 cm layers and compacted with a vibrating 9

plateto obtainlayers withanaverage density of 838.8 kg/m³(or 85% ofthe optimum 10

Proctorstandard). The wallsaroundeach ofthecells werethermallyshieldedfromthe 11

outside environment by 15 cm thick polystyrene panels. The goal was to prevent lateral 12

migration of moisture duetothermal gradients. 13

Environmental, physico-chemical and microbiological variables 14

Probes for measurement of water content (θ), suction (ψ),temperature and gas 15

concentration wereinstalled atfour separate downgradient points and at 4 different 16

depths(6inthecase of gas probes)in each profile(Figure 1b). Meteorological data, 17

including precipitation and atmospheric pressure, were recorded continuously by a 18

weather station installed near the exprimental plot. Suction data is neither presented nor 19

discussedinthe present paper. Thetemperature(HOBO U12,from Onset)and water 20

content (ECH2O EC-5, from Decagon) probes were connectedto dataloggers.

21

On a weekly basis, vertical concentration profiles of CH4 and O2 in the pore volume

22

ofthe PMOB were manually obtained. Forthis, gassamples werecollectedfrom gas 23

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probesinstalled permanently at 6 different depths withinthe PMOB (Figure 1b). Samples 1

were analysed in situ using a portableinfrared gas analyzer (Columbus Instruments). Gas 2

emissionsatthesurface oftheexperimental plot werealso measured usinga dynamic 3

chamber, as described by Fécil et al. (Fécil et al., 2003). 4

Samples were collected from the uppermost part of the substrate (0-10, 10-20, 20-30 5

and 30-40 cm) using PVC coringtubes (internal diameter = 5 cm). The cores were kept at 6

4ºC until analyzed in the laboratory within 24-hours. The analyses included pH 7

(determinedin distilled water 1:3 v/v) (Page et al., 1982), counts of methanotrophs using 8

the most probable number method, and quantitative detection of methanotrophs by 9

targetingthe particulate methane monooxygenase gene(pmoA) using quantitative-PCR 10

(Q-PCR). For methanotrophcounts,soilslurries wereserially dilutedin 96-well plates 11

(microliter) containing ammonium mineral salts medium. The plates wereincubated for 4 12

weeks at 25ºCin gastightjars containing 18% CH4in air.

13

Q-PCR is a relatively novel methodological approach to quantifying bacterial 14

abundanceintheenvironment. This methodis usedto determinetheconcentration of 15

target DNAin environmentalextracts. Inthis study, pmoA wasthetarget gene sinceitis 16

presentinalmostall known methanotrophs, withthe possibleexception of members of 17

the genus Methylocella, which are generally isolated from acidic environments (Dedysh 18

et al., 1998; Dedysh et al., 2000; Dunfield et al., 2003; Theisen et al., 2005). For Q-PCR 19

analysis,total DNA wasextracted directlyfrom oursamples using mechanicalshaking 20

and an enzymaticlysis procedure as describedin Fortin et al (2004). Genomic DNA was 21

then purified usinga MicroSpincolumn containning polyvinylpolypyrrolidone(PVPP) 22

(Berthelet et al., 1996). Total genomic DNA was quantified by staining with pico green 23

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dye using a Spectrafluor fluorometer (Tecan) and lambda phage DNA as a standard. Q-1

PCR was performed on DNAtemplate usingthe pmoA primer set A189/mb661. 2

3

Results and discussion 4

Throughout the present study, with the exception of the period between late July and 5

early August 2006,the barometric pressure (pbar) ranged from 99.34to 102.90 kPa (mean

6

± SD = 101.12 ± 0.69 kPa; Figure 2) and fluctuated daily. This fluctuation was mainly 7

oppositetothe windspeed withasignificant negative correlation(r = - 0.5, p < 0.05) 8

found between these two variables. Nastev et al (2001), Czepiel et al. (2003) and Gebert 9

and Gröengröeft (2006) found an inverse linear relationship between landfill CH4

10

emissions and pbar. Accordingly, it can be expectedthat the fluctuation observed during

11

this study affectedthe outward flow of biogas. However, since gas sampling and surface 12

measurements of gas emissions were performed on a weekly basis, whereas 13

meteorological data was recorded on an hourly basis, a clear relationship between 14

outward gas flow and meteorological data could not be establishedinthe present study. 15

Besides external controllingfactorssuch as barometric pressure, windspeed and 16

engineered controls (gas collection system), the water content of the cover soil has been 17

identified as animportant factor controlling CH4 emissions fromlandfills (Bogner, 1992;

18

Bogneretal., 1995; Kjeldsen, 1996). The watercontent ofthesoil depends mainly on 19

atmospheric precipitation and onthe capacity ofthe materialto retain or release moisture. 20

During this study, precipitation varied between 0 and 1.12 mm d-1 with a mean ± SD =

21

0.06 ± 0.17 mm d-1, whereas the air temperature ranged from 2.3 ºC to 22.7 ºC, with a

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mean equal to 12.86 ± 5.09 ºC. Both variables fluctuated with time, but the trend in air 1

temperature showed a gradual decrease as Fall approached (Figure 2). 2

The volumetric water content (θ) of the substrate varied from 51% to 64% and was 3

obviouslysensitiveto precipitation. Near thesurface ofthe PMOB, wheresignificant 4

variations in the water content occurred, values ofθ were close to the lower range (θ = 5

52%) only ontwo occasions, July 20 and September 25. Both occasions correspondedto 6

periods of high temperature (Figure 2) and prolonged absence of precipitation. 7

Otherwise, most of the water content profiles exhibited variable trends that were related 8

to episodic events of precipitation spread out over a variable number of days during the 9

study. For example, changes observed in the water content profiles on August 2, 10

September 5 and October 2matched with periods of significant precipitation (Figures 2 11

and 3). Furthermore, from October 2 until the end ofthe study,the water content 12

remained highinthe uppermost part ofthe cover(Figure 3), whiletheairtemperature 13

remained relativelylow at ~ 8ºC (Figure 2). 14

As expected, the temperature profiles (Figure 3) exhibited variations with depth and 15

time,the highestthermal amplitude (25to 10ºC) being associated withthe uppermost part 16

of the cover, which is most affected by weather conditions. At 82 cm below the surface, 17

thetemperature varied from ~22ºC duringthe hottest periodto ~15ºCin October. 18

Temperature has a directimpact on biological reactions, such asthe oxidation of CH4 by

19

methanotrophs;it has beenshownthat CH4consumption by methanotrophsincreases

20

withtemperature (Whalen et al., 1990; Czepiel et al., 1996; Gebert et al., 2003; Borjesson 21

et al., 2004; Park et al., 2005; Jugnia et al., 2006), when the CH4 concentration, among

22

other factors,is notlimiting (Pawlowska and Stepniewski, 2006). 23

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With the exception of the CH4 concentration measured onJuly 20, concentrations of

1

CH4atthe bottom ofthe PMOB(82cm) were generallycloseto 55%(Figure 4),a

2

common valuefor CH4concentrationin biogasfrom landfills(Bogner et al., 1995;

3

Borjesson et al., 2001; Kallistova et al., 2005). Thisindicatesthatthe supply of CH4 was

4

notalimitingfactor duringthestudy period. The decreasein CH4concentrationasit

5

diffusedthroughthesand-compostsubstrateexhibited different patterns overtime. As 6

shownin Figure 4, duringthefirstfivesamplingcampaigns(July 20to Sept 1),the 7

concentration of CH4inthe upper most gas probe(at 10cm) decreasedto muchlower

8

values(from below detectabletoapproximately 18%)thanthe 55%foundatthe base. 9

The abatement was gradualthroughoutthe profileforthefirst two sampling dates. 10

However, for the other dates, the oxidation front (indicated by the steep decline in CH4

11

concentration) seemsto belocated between 30 and 20 cm fromthe surface(Figure 4). 12

In a controlledlaboratory environment, Berger et al.(2005) observed an upward 13

displacement of the oxidation zone as infiltration was supplied to their test cell. 14

Furthermore,factorssuchastemperature, moisturecontentandavailability of O2 may

15

influencethe depth of optimum oxidation, whichcan varysignificantly. Forexample, 16

Whalen et al. (1990) foundthatthis zone is situated between 3 and 12 cm, while 17

Visvanathan et al. (1999) located it between 15 and 40 cm. Humer and Lechner (2001) 18

found in their field test, where sewage sludge and MSW compost was used as substrate, 19

that the zone of maximum CH4 oxidation extended from 40 and 90 cm. The conditions

20

under which these covers were placed, as well as climatic and other limiting conditions, 21

such as precipitation, pH, O2 supply, etc., affect oxidationrates and, ultimately,the

22

location ofthe optimal oxidation zone. 23

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The pH ofthe soil was not alimiting factorinthis study, asit varied only slightly (7.0 1

to 7.3; mean ± SD = 7.2 ± 0.1) overtimeand depththroughoutthe monitoring period 2

(Figure 5). Growth of methanotrophs is generally optimal in this pH range (Whittenbury 3

et al., 1970; Dunfield et al., 1993; Hütsch et al., 1994; Bender and Conrad, 1995), which 4

indicatesthat fluctuations observed fortheactivity and abundance of methanotrophs were 5

governed by other factors. The oxygen supply below 10 cm varied from below detectable 6

to 9.7% duringthefirstfivesamplingcampaigns, but duringthesubsequentsampling 7

(September 5 onwards),the O2concentrationremained verylow(~ 1%) below 30cm.

8

From September onwards the water content and temperature within the PMOB began to 9

decrease with depth. The high water contentthroughthe depth profile acted as a physical 10

barrier to O2 penetration (Boeckx and Van Cleemput, 1996; Czepiel et al., 1996;

11

Christophersenetal., 2000; Kallistovaetal., 2007). Studies of CH4 oxidation kinetics

12

have shownthatthe oxidation rate plummets whenthe gaseous O2concentrationislower

13

than ~ 3%(Czepiel et al., 1996; Stein and Hettiaratchi, 2001; Gebert et al., 2003). 14

Accordingly, the temperature and water content within the substrate might have 15

simultaneously affected CH4 oxidation duringthis study.

16

Starting on September 5, and withthe exception ofthe profile obtained on September 17

11,thereductionin CH4concentrationsstartedto be negligible below 10cmfromthe

18

surface. Surprisingly, surface emissions of CH4 below the detection limit were obtained

19

during this same period. In general, the low reductions in CH4 concentrations across the

20

profile should be accompanied by high surface fluxes; it can thus be hypothesized that, 21

during this period, a significant proportion of the CH4 was oxidized within the first 10

22

cm of the PMOB. Although this interpretation should be taken with caution (gas 23

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measurements were not performed within the 0 to 10 cm superficial layer), this 1

hypothesis is substantiated by Q-PCR analyses, which showed that the number of copies 2

of the pmoA gene decreased 10 folds between the 0–10 and 10–20 cm sublayers (Figure 3

5). Similar to the observation by Kolb et al. (2003) that cell numbers determined by Q-4

PCRanalysisinspikedsoilsamplesshoweda good match withthe numbers ofadded 5

cells,thistrend paralleledthat observed with methanotrophcountsthat were highestin 6

the upper most sublayer (Figure 5). Somestudies (Jones and Nedwell, 1993; Bender and 7

Conrad, 1995; Borjessonetal., 1998b; Kallistovaetal., 2007)reportedacorrelation 8

between CH4 oxidizing activity andthe number of cultivable methanotrophs.

9

On average, the number of methanotrophs (range = 1.50 x 106 to 1.83 x 108 CFU g-1

10

DW(dry weight ofsoil); mean ± SD = 3.40 ± 2.68 x 107 CFU g-1 DW) decreased 11

somewhat with depth,from 7.83 ± 5.42 108 CFU g-1 DW nearthesurface(0-10cm)

12

where –itis hypothesized- CH4 oxidation mainly occurred. A similarly high population of

13

methanotrophs(1.8 x 106to 3.2 x 107cells per g) was detected inthe upperlayer ofa 14

mature compost material (Jäckel et al., 2005), whereas population sizes ofn x 106 cells g

-15

1 soil were detected previouslyin wetlandandlandfill soils usingthe MPN method (Jones

16

and Nedwell, 1993; Svenning et al., 2003; Kallistova et al., 2007). 17

Temporal evolution of depth profiles of methanotrophs counts could be divided into 18

two phases:thelag phase and the growth phaseitself (Figure 5). Thelag phase followed 19

the construction andincludedthe firstthree sampling campaigns, with abundance profiles 20

more orlessidentical. Thelength ofthelag phasein a mediumto whichthe cells require 21

adaptation varies withthe history oftheculture(Dean, 1957). Usually,theincreasein 22

total mass precedes any division,the majorityofthe cells swellingtowardsthe end ofthe 23

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lag period. Therefore, any measuredincrease ofthe CH4 oxidation activity duringthislag

1

phase was dueto anincrease ofthe activity of the resident population ratherthanthe size 2

ofthe methanotrophic population. Kightleyet al(1995)reportedthat underlaboratory 3

conditions(19ºC),ittook 1 monthtoestablishthesteadystateconditions neededfor 4

growing methanotrophs in a soil column. Our results indicated that the establishment of 5

methanotrophs probablytakes muchlonger under field conditions. This observation 6

corroboratesareportfroma previousstudyin alandfillcoversoil by Borjessonetal. 7

(1998a). Duringthesecond phase, whichextendedfrom August untilthe beginning of 8

October 2006, counts of methanotrophsincreased withtime, particularly atthe surface,to 9

reachthe maximum values observed duringthis study. 10

11

Conclusions 12

Fromthe results presented,the substrate (or soil) usedto constructthe PMOB 13

(mixture of sand and compost), was able to sustain and promote growth of 14

methanotrophic bacteria. However,the water content ofthe soil seemsto be a key factor 15

influencing deep CH4 oxidation,the extent of which requires a better understanding. The

16

uppermost 0-10cmlayer appearsto bethe mostimportantlayerin CH4 consumption, and

17

the next challenge will be to explore this in more detail by conducting more 18 measurements withinthis zone. 19 20 Acknowledgements 21

The Authors are gratefulforthetechnicalsupport of S. Sanschagrinfor Q-PCR 22

analysis, and wishto acknowledgethe financial support provided bythe National Science 23

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and Engineering Research Council of Canada (NSERC), BIOCAP Canada, the 1

Biotechnology Research Institute (NRC) and Waste Management Canada under strategic 2

grant # GHG 322418-0 3

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10 11 12

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Figurelegends 1

Figure 1 – (A) Lateral cross-section of PMOB-1 and (B) profileoftheinstalled probes 2

3

Figure 2 - Temporal evolution of the barometric pressure, wind speed, precipitation and 4

airtemperature duringthe monitoring period 5

6

Figure 3 - Temporal evolution ofthe profiles oftemperature and water content withinthe 7

PMOB 8

9

Figure 4- Temporalevolution ofthe profiles of CH4and O2concentrations withinthe

10

PMOB 11

12

Figure 5 - Temporal evolution of pH, colony forming unit (CFU) of methanotrophs and 13

number of pmoA copy withinthe PMOB 14

15 16 17

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(24)

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