de la variabilité intraspécifique au sein des communautés et entre communautés. Cette
étude visait notamment à montrer les différences en traits fonctionnels et l’importance de
l’échelle spatiale. J’ai participé à l’analyse statistique et à l’écriture de ce travail. L’abstract
de cet article, maintenant soumis est en annexe.
4 Références
ALBERT, C., W. THUILLER, N. YOCCOZ, R. DOUZET, S. AUBERT et S. LAVOREL. 2010a, «A
multi-trait approach reveals the structure and the relative importance of intra-vs.
in-terspecific variability in plant traits»,Functional Ecology, vol. 24, n
o6, p. 1192–1201.32,
33
ALBERT, C., W. THUILLER, N. YOCCOZ, A. SOUDANT, F. BOUCHER, P. SACCONEet S. LAVO
-REL. 2010b, «Intraspecific functional variability : extent, structure and sources of
varia-tion»,Journal of Ecology, vol. 98, n
o3, p. 604–613. 32
BOLNICK, D., R. SVANBÄCK, J. FORDYCE, L. YANG, J. DAVIS, C. HULSEY et M. FORISTER.
2003, «The ecology of individuals : incidence and implications of individual
specializa-tion»,The American Naturalist, vol. 161, n
o1, p. 1–28.32
CANTALAPIEDRA, J. L., M. H. FERNáNDEZet J. MORALES. 2014, «The biogeographic
his-tory of ruminant faunas determines the phylogenetic structure of their assemblages at
different scales»,Ecography, vol. 37, n
o1, p. 1–9. 32
CARBONI, M., T. MÜNKEMÜLLER, L. GALLIEN, S. LAVERGNE, A. ACOSTAet W. THUILLER.
2013, «Darwin’s naturalization hypothesis : scale matters in coastal plant
communi-ties»,Ecography, vol. 36, n
o5, p. 560–568. 30
CAVENDER-BARES, J., D. D. ACKERLY, D. A. BAUM et F. A. BAZZAZ. 2004, «Phylogenetic
overdispersion in Floridian oak communities»,American Naturalist, vol. 163, n
o6, p.
823–843.34
CAVENDER-BARES, J., A. KEEN et B. MILES. 2006, «Phylogenetic structure of Floridian
plant communities depends on taxonomic and spatial scale»,Ecology, vol. 87, n
osp7,
p. 109–122.33,34
CAVENDER-BARES, J., K. KOZAK, P. FINEet S. KEMBEL. 2009, «The merging of community
ecology and phylogenetic biology»,Ecology Letters, vol. 12, n
o7, p. 693–715.33
CHASE, J. M. et J. A. MYERS. 2011, «Disentangling the importance of ecological niches
from stochastic processes across scales»,Philosophical Transactions of the Royal Society
B : Biological Sciences, vol. 366, n
o1576, p. 2351–2363. 30
CHAVE, J. 2013, «The problem of pattern and scale in ecology : what have we learned in 20
years ?»,Ecology letters, vol. 16, n
os1, p. 4–16. 30
CHOLER, P., R. MICHALET et R. CALLAWAY. 2001, «Facilitation and competition on
gra-dients in alpine plant communities»,Ecology, vol. 82, n
o12, p. 3295–3308.34
CIANCIARUSO, M. V., M. A. BATALHA, K. J. GASTON et O. L. PETCHEY. 2009, «Including
intraspecific variability in functional diversity»,Ecology, vol. 90, n
o1, p. 81–89. 32
CORNWELL, W. K., M. WESTOBY, D. S. FALSTER, R. G. FITZJOHN, B. C. O’MEARA, M. W.
PENNELL, D. J. MCGLINN, J. M. EASTMAN, A. T. MOLES, P. B. REICH, D. C. TANK, I. J.
WRIGHT, L. AARSSEN, J. M. BEAULIEU, R. M. KOOYMAN, M. R. LEISHMAN, E. T. MIL
-LER, Ã. NIINEMETS, J. OLEKSYN, A. ORDONEZ, D. L. ROYER, S. A. SMITH, P. F. STEVENS,
L. WARMAN, P. WILFet A. E. ZANNE. 2014, «Functional distinctiveness of major plant
lineages»,Journal of Ecology, vol. 102, n
o2, p. 345–356. 33
CRISP, M. D., M. T. K. ARROYO, L. G. COOK, M. A. GANDOLFO, G. J. JORDAN, M. S. MC
-GLONE, P. H. WESTON, M. WESTOBY, P. WILF et H. P. LINDER. 2009, «Phylogenetic
biome conservatism on a global scale»,Nature, vol. 458, n
o7239, p. 754–756.34
DARWIN, C. 1859,The Origin of Species, John Murray, London.34
DRAKARE, S., J. LENNONet H. HILLEBRAND. 2006, «The imprint of the geographical,
evo-lutionary and ecological context on species-area relationships»,Ecology Letters, vol. 9,
p. 215–227.31
FAUTH, J. E., J. BERNARDO, M. CAMARA, W. J. RESETARITS, J. VAN BUSKIRK et S. A.
MCCOLLUM. 1996, «Simplifying the jargon of community ecology : a conceptual
ap-proach»,The American Naturalist, vol. 147, n
o2, p. 282–286.33
GÖTZENBERGER, L., F. DE BELLO, K. A. BRATHEN, J. DAVISON, A. DUBUIS, A. GUISAN,
J. LEPS, R. LINDBORG, M. MOORA, M. PÄRTEL, L. PELLISSIER, J. POTTIER, P. VIT
-TOZ, K. ZOBEL et M. ZOBEL. 2012, «Ecological assembly rules in plant
communities-approaches, patterns and prospects»,Biological Reviews, vol. 87, n
o1, p. 111–127. 31
HARDY, O. J. et B. SENTERRE. 2007, «Characterizing the phylogenetic structure of
commu-nities by an additive partitioning of phylogenetic diversity»,Journal of Ecology, vol. 95,
n
o3, p. 493–506. 35
JUNG, V., C. VIOLLE, C. MONDY, L. HOFFMANNet S. MULLER. 2010, «Intraspecific
varia-bility and trait-based community assembly»,Journal of Ecology, vol. 98, n
o5, p. 1134–
1140. 32,33
KAZAKOU, E., C. VIOLLE, C. ROUMET, M.-L. NAVAS, D. VILE, J. KATTGE et E. GARNIER.
2014, «Are trait-based species rankings consistent across data sets and spatial scales ?»,
Journal of Vegetation Science, vol. 25, n
o1, p. 235–247.32
KICHENIN, E., D. A. WARDLE, D. A. PELTZER, C. W. MORSE et G. T. FRESCHET. 2013,
«Contrasting effects of plant inter- and intraspecific variation on community-level trait
measures along an environmental gradient»,Functional Ecology, vol. 27, p. 1254–1261.
33
KUNSTLER, G., S. LAVERGNE, B. COURBAUD, W. THUILLER, G. VIEILLEDENT, N. E. ZIM
-MERMANN, J. KATTGEet D. A. COOMES. 2012, «Competitive interactions between forest
trees are driven by species’ trait hierarchy, not phylogenetic or functional similarity :
implications for forest community assembly»,Ecology Letters, vol. 15, n
o8, p. 831–840.
31
LEVIN, S. A. 1992, «The Problem of Pattern and Scale in Ecology : The Robert H. MacArthur
Award Lecture»,Ecology, vol. 73, n
o6, p. 1943–1967.30
MACARTHUR, R. et R. LEVINS. 1967, «The limiting similarity, convergence, and divergence
of coexisting species»,American naturalist, vol. 101, p. 377–385. 33
MAZEL, F., F. GUILHAUMON, N. MOUQUET, V. DEVICTOR, D. GRAVEL, J. RENAUD, M. V.
CIANCIARUSO, R. LOYOLA, J. A. F. DINIZ-FILHO, D. MOUILLOT et W. THUILLER. 2014,
«Multifaceted diversity-area relationships reveal global hotspots of mammalian
spe-cies, trait and lineage diversity»,Global Ecology and Biogeography, vol. 23, p. 836–847.
31
MESSIER, J., B. J. MCGILLet M. J. LECHOWICZ. 2010, «How do traits vary across ecological
scales ? A case for trait-based ecology»,Ecology Letters, vol. 13, n
o7, p. 838–848. 32
MITCHELL, M., J. CAHILL JR et D. HIK. 2009, «Plant interactions are unimportant in a
subarctic-alpine plant community»,Ecology, vol. 90, n
o9, p. 2360–2367.34
MOUQUET, N., V. DEVICTOR, C. N. MEYNARD, F. MUNOZ, L.-F. BERSIER, J. CHAVE, P. COU
-TERON, A. DALECKY, C. FONTAINE, D. GRAVEL, O. J. HARDY, F. JABOT, S. LAVERGNE,
M. LEIBOLD, D. MOUILLOT, T. MÜNKEMÜLLER, S. PAVOINE, A. PRINZING, A. S. RO
-DRIGUES, R. P. ROHR, E. THÉBAULTet W. THUILLER. 2012, «Phylogenetic ecology :
ad-vances and perspectives»,Biological Reviews, vol. 87, n
o4, p. 769–785. 32
MUNOZ, F., B. R. RAMESH et P. COUTERON. 2014, «How do habitat filtering and niche
conservatism affect community composition at different taxonomic resolutions ?»,
Eco-logy, vol. 95, n
o8, p. 2179–2191.33
MÜNKEMÜLLER, T., L. GALLIEN, S. LAVERGNE, J. RENAUD, C. ROQUET, S. DULLINGER,
A. GUISAN, J. LENOIR, J.-C. SVENNING, P. VITTOZ, W. WILLNER, T. WOHLGEMUTH,
N. ZIMMERMANNet W. THUILLER. 2014, «Scale decisions can reverse conclusions on
community assembly processes.»,Global Ecology and Biogeography, vol. 23, p. 620–632.
30
PELLISSIER, L., H. NICULITA-HIRZEL, A. DUBUIS, M. PAGNI, N. GUEX, C. NDIRIBE, N. SA
-LAMIN, I. XENARIOS, J. GOUDET, I. SANDERSet A. GUISAN. 2014, «Soil fungal
commu-nities of grasslands are environmentally structured at a regional scale in the Alps»,
Mo-lecular Ecology, vol. 23, p. 4274–4290. 33
PERES-NETO, P., J. OLDENet D. JACKSON. 2001, «Environmentally constrained null
mo-dels : site suitability as occupancy criterion»,Oikos, vol. 93, n
o1, p. 110–120. 35
POISOT, T., B. PÉQUINet D. GRAVEL. 2013, «High-Throughput Sequencing : A Roadmap
Toward Community Ecology»,Ecology and Evolution, vol. 3, n
o4, p. 1125–1139.33
RICKLEFS, R. 2008, «Disintegration of the Ecological Community»,The American
Natura-list, vol. 172, n
o6, p. 741–750.34
SIEFERT, A. 2012, «Incorporating intraspecific variation in tests of trait-based community
assembly»,Oecologia, vol. 170, n
o3, p. 767–775. 33
SLINGSBY, J. et G. A. VERBOOM. 2006, «Phylogenetic Relatedness Limits Co-occurrence
at Fine Spatial Scales : Evidence from the Schoenoid Sedges (Cyperaceae : Schoeneae)
of the Cape Floristic Region, South Africa»,The American Naturalist, vol. 168, n
o1, p.
14–27.34
STEIN, A., K. GERSTNER et H. KREFT. 2014, «Environmental heterogeneity as a
univer-sal driver of species richness across taxa, biomes and spatial scales»,Ecology Letters,
vol. 17, n
o7, p. 866–880. 31
SWENSON, N., B. ENQUIST, J. PITHER, J. THOMPSONet J. ZIMMERMAN. 2006, «The
pro-blem and promise of scale dependency in community phylogenetics»,Ecology, vol. 87,
n
o10, p. 2418–2424. 30,34
TABERLET, P., E. COISSAC, F. POMPANON, C. BROCHMANN et E. WILLERSLEV. 2012,
«To-wards next-generation biodiversity assessment using DNA metabarcoding»,Molecular
ecology, vol. 21, n
o8, p. 2045–2050. 33
THUILLER, W., L. GALLIEN, I. BOULANGEAT, F. DEBELLO, T. MÜNKEMÜLLER, C. ROQUET
et S. LAVERGNE. 2010, «Resolving Darwin’s naturalization conundrum : a quest for
evi-dence»,Diversity and Distributions, vol. 16, n
o3, p. 461–475. 30,32
TOJU, H., P. R. GUIMARãES, J. M. OLESENet J. N. THOMPSON. 2014, «Assembly of
com-plex plant-fungus networks»,Nature Communications, vol. 5.31
VALENTINI, A., F. POMPANONet P. TABERLET. 2009, «DNA barcoding for ecologists»,Trends
in Ecology & Evolution, vol. 24, n
o2, p. 110–117. 33
VAMOSI, S., S. HEARD, J. VAMOSIet C. WEBB. 2009, «Emerging patterns in the comparative
analysis of phylogenetic community structure»,Molecular Ecology, vol. 18, n
o4, p. 572–
592.30
VIOLLE, C., H. CASTRO, J. RICHARTE et M.-L. NAVAS. 2009a, «Intraspecific seed trait
va-riations and competition : passive or adaptive response ?»,Functional Ecology, vol. 23,
n
o3, p. 612–620. 33
VIOLLE, C., B. J. ENQUIST, B. J. MCGILL, L. JIANG, C. H. ALBERT, C. HULSHOF, V. JUNG
et J. MESSIER. 2012, «The return of the variance : intraspecific variability in community
ecology»,Trends in Ecology & Evolution, vol. 27, n
o4, p. 244–252. 33
VIOLLE, C., E. GARNIER, J. LECOEUR, C. ROUMET, C. PODEUR, A. BLANCHARD et M.-L.
NAVAS. 2009b, «Competition, traits and resource depletion in plant communities»,
Oe-cologia, vol. 160, n
o4, p. 747–755. 33
WEIHER, E., D. FREUND, T. BUNTON, A. STEFANSKI, T. LEE et S. BENTIVENGA. 2011,
«Advances, challenges and a developing synthesis of ecological community assembly
theory»,Philosophical Transactions of the Royal Society B : Biological Sciences, vol. 366,
n
o1576, p. 2403–2413. 30
WIENS, J. A. 1989, «Spatial scaling in ecology»,Functional ecology, vol. 3, n
o4, p. 385–397.
30,31
WILLIS, C. G., M. HALINA, C. LEHMAN, P. B. REICH, A. KEEN, S. MCCARTHY et
J. CAVENDER-BARES. 2010, «Phylogenetic community structure in Minnesota oak
sa-vanna is influenced by spatial extent and environmental variation»,Ecography, vol. 33,
n
o3, p. 565–577. 31
Chapitre 1
A family of null models to distinguish
Dans le document
De la communauté à la méta-communauté, décrypter les patrons de diversité
(Page 42-48)