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GUN4 ensures efficient chlorophyll synthesis and proper balancing of the photosynthetic electron transport chain

Five genetic loci were identified in a genetic screen for mutants affected in chloroplast-to-nucleus signaling in Arabidopsis (Susek et al., 1993). Four of them are involved in the tetrapyrrole biosynthetic pathway: gun2 and gun3 in heme catabolism, gun4 and gun5 in chlorophyll synthesis (Larkin et al., 2003; Mochizuki et al., 2001; Susek et al., 1993). The GUN4 protein was previously uncharacterized. This protein binds protoporphyrin IX and Mg-protoporphyrin IX and facilitates the release of the product from the catalytic site of the ChlH subunit of the Mg-chelatase (Davison et al., 2005; Larkin et al., 2003; Verdecia et al., 2005).

We have identified and characterized a gun4 mutant of Chlamydomonas reinhardtii and shown that in the absence of the GUN4 protein, Chlamydomonas accumulates 50-60% of chlorophyll compared to wild type. This result was somehow surprising, given the fact that in Arabidopsis and Synechocystis the absence of GUN4 causes a drastic reduction in chlorophyll content, with a maximum accumulation of 25 % of the wild type measured in Synechocystis under dim light (Larkin et al., 2003; Peter and Grimm, 2009; Sobotka et al., 2008). In spite of the relatively high level of chlorophyll accumulation in the Chlamydomonas gun4 mutant, its photoautotrophic growth is severely impaired We have shown that under conditions in which the photoxidative damage is not severe (dim light) the mutant can grow, but at a rate which is significantly lower compared to the wild type. Analysis of the photosynthetic apparatus revealed that the antenna systems of PSII and PSI are reduced to 40% and 20% of wild type levels, respectively. Surprisingly the ratio of functional PSI over functional PSII is five fold

131 higher in gun4 than in the wild type, despite a greater reduction of the PSI antenna system compared to PSII. Indeed in the mutant, PSII appears to be disconnected from the photosynthetic electron transport chain as revealed by the measurement of the redox state of the reaction center of PSI (P700) in the presence or absence of DCMU. Treatment with DCMU does not affect the oxidation state of P700 in the mutant, whereas in the wild type it blocks the linear electron flow from PSII, thus causing an oxidation of the PSI reaction center. The impairment in linear electron flow may be responsible for the reduced photoautotrophic growth of the mutant. In fact the electrons pumped to the stromal side by PSI seem to be used to re-reduce the reaction center of PSI in the gun4 mutant. This would lead to a decreased availability of reducing power for the metabolic reactions in the chloroplast. Moreover, consequences of the reduced functionality of PSII are a reduction in the water splitting reaction and a more oxidized state of the PQ pool. These two events would lead to a decrease of the proton concentration in the lumen of the thylakoids and thus to a reduction in ATP synthesis. Taken together the reduction of ATP synthesis and of NADPH strongly supports the hypothesis that the photoautotrophic growth is reduced due to the block in photosynthetic linear electron flow.

As mentioned earlier, GUN4 was found in a genetic screen for mutants impaired in chloroplast retrograde signaling (Susek et al., 1993). We found an increase in the expression of LhcII-4 and Lhcb-4 genes compared to the wild type, but interestingly the mutant is still able to downregulate the expression of the two genes in high light. This result suggests that one retrograde signal is affected in the gun4 mutant, but another is still able to repress the expression of the photosynthetic genes upon light stress. In this respect, it is interesting to note that despite a drastic reduction in the antenna size of PSI, we have observed an increase in its activity compared to PSII. It is possible that a constant oxidized state of the PQ pool is interpreted by the cell as a signal to reduce the activity of PSI. This would be achieved in the long term by a reduction in the concentration of LHCI, the antenna system of PSI. The redox

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state of the PQ pool, hence the photosynthetic activity, seems to be an important regulatory chloroplast-to-nucleus signal in the gun4 mutant in Chlamydomonas.

We are particularly interested in analyzing the in vivo functions of GUN4 not related to the reaction catalyzed by the Mg-chelatase. For this purpose, we prepared mutant versions of the protein with single amino acid substitutions. The mutations were designed on the basis of the analysis of the Synechocystis GUN4 published by Verdecia and colleagues (Verdecia et al., 2005). We examined mutations which affect porphyrin binding in vitro. This analysis revealed that some of these mutations do not have the same effect as GUN4 of Synechocystis. Similar differences have been obtained also by Adhikari and colleagues with the Arabidosis GUN4 (Adhikari et al., 2009) and can be explained assuming some diversity in the positioning of the amino acids in proteins from different species. Nevertheless, we are currently screening transformants for clones expressing other mutant versions of the Chlamydomonas protein and we hope that their analysis will help in understanding the role of GUN4 in photoprotection and in retrograde signaling.

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References

Abdallah, F., Salamini, F., and Leister, D. (2000). A prediction of the size and evolutionary origin of the proteome of chloroplasts of Arabidopsis. Trends Plant Sci 5, 141-142.

Adhikari, N.D., Orler, R., Chory, J., Froehlich, J.E., and Larkin, R.M. (2009a). Porphyrins promote the association of GENOMES UNCOUPLED 4 and a Mg-chelatase subunit with signal transduction. Annu Rev Plant Biol 55, 373-399.

Arnaud, N., Cheynet, V., Oriol, G., Mandrand, B., and Mallet, F. (1997). Construction and expression of a modular gene encoding bacteriophage T7 RNA polymerase. Gene 199, 149-156.

Bassi, R., Soen, S.Y., Frank, G., Zuber, H., and Rochaix, J.D. (1992). Characterization of chlorophyll a/b proteins of photosystem I from Chlamydomonas reinhardtii. J Biol Chem 267, 25714-25721.

Bassi, R., and Wollman, F.-A. (1991). The chlorophyll-a/b proteins of photosystem II in Chlamydomonas reinhardtii. Planta 183, 423-433.

Bateman, A., and Kickhoefer, V. (2003). The TROVE module: a common element in Telomerase, Ro and Vault ribonucleoproteins. BMC Bioinformatics 4, 49.

Beck, C.F. (2005). Signaling pathways from the chloroplast to the nucleus. Planta 222, 743-756.

Bellafiore, S., Barneche, F., Peltier, G., and Rochaix, J.D. (2005). State transitions and light adaptation require chloroplast thylakoid protein kinase STN7. Nature 433, 892-895.

Benson, A.A., and Calvin, M. (1950). Carbon Dioxide Fixation By Green Plants. Annual Review of Plant Physiology 1, 25-42.

Bonardi, V., Pesaresi, P., Becker, T., Schleiff, E., Wagner, R., Pfannschmidt, T., Jahns, P., and Leister, D. (2005). Photosystem II core phosphorylation and photosynthetic acclimation require two different protein kinases. Nature 437, 1179-1182.

Bradbeer, J.W., Atkinson, Y.E., Borner, T., and Hagemann, R. (1979). Cytoplasmic synthesis of plastid polypeptides may be controlled by plastid-synthesised RNA. Nature 279, 816-817.

Cahoon, A.B., and Timko, M.P. (2000). Yellow-in-the-dark mutants of Chlamydomonas lack the CHLL subunit of light-independent protochlorophyllide reductase. Plant Cell 12, 559-568.

134

Che, F.S., Watanabe, N., Iwano, M., Inokuchi, H., Takayama, S., Yoshida, S., and Isogai, A. (2000). Molecular characterization and subcellular localization of protoporphyrinogen oxidase in spinach chloroplasts. Plant Physiol 124, 59-70.

Chekounova, E., Voronetskaya, V., Papenbrock, J., Grimm, B., and Beck, C.F. (2001).

Characterization of Chlamydomonas mutants defective in the H subunit of Mg-chelatase. Mol Genet Genomics 266, 363-373.

Choquet, Y., Rahire, M., Girard-Bascou, J., Erickson, J., and Rochaix, J.D. (1992). A chloroplast gene is required for the light-independent accumulation of chlorophyll in Chlamydomonas reinhardtii. EMBO J 11, 1697-1704.

Cornah, J.E., Roper, J.M., Pal Singh, D., and Smith, A.G. (2002). Measurement of ferrochelatase activity using a novel assay suggests that plastids are the major site of haem biosynthesis in both photosynthetic and non-photosynthetic cells of pea (Pisum sativum L.).

Biochem. J. 362, 423-432.

Croce, R., Canino, G., Ros, F., and Bassi, R. (2002). Chromophore organization in the higher-plant photosystem II antenna protein CP26. Biochemistry 41, 7334-7343.

Czaplinski, K., Kocher, T., Schelder, M., Segref, A., Wilm, M., and Mattaj, I.W. (2005).

Identification of 40LoVe, a Xenopus hnRNP D family protein involved in localizing a TGF-beta-related mRNA during oogenesis. Dev Cell 8, 505-515.

DalCorso, G., Pesaresi, P., Masiero, S., Aseeva, E., Schunemann, D., Finazzi, G., Joliot, P., Barbato, R., and Leister, D. (2008). A complex containing PGRL1 and PGR5 is involved in the switch between linear and cyclic electron flow in Arabidopsis. Cell 132, 273-285.

Danon, A., and Mayfield, S.P. (1991). Light regulated translational activators: identification of chloroplast gene specific mRNA binding proteins. EMBO J 10, 3993-4001.

Davies, J.P., Weeks, D.P., and Grossman, A.R. (1992). Expression of the arylsulfatase gene from the {beta}2-tubulin promoter in Chlamydomonas reinhardtii. Nucl. Acids Res. 20, 2959-2965.

Davison, P.A., Schubert, H.L., Reid, J.D., Iorg, C.D., Heroux, A., Hill, C.P., and Hunter, C.N. (2005). Structural and biochemical characterization of Gun4 suggests a mechanism for its role in chlorophyll biosynthesis. Biochemistry 44, 7603-7612.

Davletova, S., Schlauch, K., Coutu, J., and Mittler, R. (2005). The zinc-finger protein Zat12 plays a central role in reactive oxygen and abiotic stress signaling in Arabidopsis. Plant Physiol 139, 847-856.

Dereeper, A., Guignon, V., Blanc, G., Audic, S., Buffet, S., Chevenet, F., Dufayard, J.F., Guindon, S., Lefort, V., Lescot, M., et al. (2008). Phylogeny.fr: robust phylogenetic analysis for the non-specialist. Nucleic Acids Res 36, W465-469.

Durnford, D.G., and Falkowski, P.G. (1997). Chloroplast redox regulation of nuclear gene transcription during photoacclimation. Photosynthesis Research 53, 229-241.

Durrant, I. (1990). Light-based detection of biomolecules. Nature 346, 297-298.

135 Elrad, D., and Grossman, A.R. (2004). A genome's-eye view of the light-harvesting polypeptides of Chlamydomonas reinhardtii. Curr Genet 45, 61-75.

Falciatore, A., Merendino, L., Barneche, F., Ceol, M., Meskauskiene, R., Apel, K., and Rochaix, J.D. (2005). The FLP proteins act as regulators of chlorophyll synthesis in response to light and plastid signals in Chlamydomonas. Genes Dev 19, 176-187.

Fey, V., Wagner, R., Brautigam, K., and Pfannschmidt, T. (2005a). Photosynthetic redox control of nuclear gene expression. J Exp Bot 56, 1491-1498.

Fey, V., Wagner, R., Brautigam, K., Wirtz, M., Hell, R., Dietzmann, A., Leister, D., Oelmuller, R., and Pfannschmidt, T. (2005b). Retrograde plastid redox signals in the expression of nuclear genes for chloroplast proteins of Arabidopsis thaliana. J Biol Chem 280, 5318-5328.

Finazzi, G., Buschlen, S., de Vitry, C., Rappaport, F., Joliot, P., and Wollman, F.A. (1997).

Function-directed mutagenesis of the cytochrome b6f complex in Chlamydomonas reinhardtii:

involvement of the cd loop of cytochrome b6 in quinol binding to the Q(o) site. Biochemistry 36, 2867-2874.

Finazzi, G., Furia, A., Barbagallo, R.P., and Forti, G. (1999). State transitions, cyclic and linear electron transport and photophosphorylation in Chlamydomonas reinhardtii. Biochim Biophys Acta 1413, 117-129.

Finazzi, G., Johnson, G.N., Dall'Osto, L., Zito, F., Bonente, G., Bassi, R., and Wollman, F.A. (2006). Nonphotochemical quenching of chlorophyll fluorescence in Chlamydomonas reinhardtii. Biochemistry 45, 1490-1498.

Finazzi, G., Rappaport, F., Furia, A., Fleischmann, M., Rochaix, J.D., Zito, F., and Forti, G. (2002). Involvement of state transitions in the switch between linear and cyclic electron flow in Chlamydomonas reinhardtii. EMBO Rep 3, 280-285.

Fuhrmann, M., Hausherr, A., Ferbitz, L., Schodl, T., Heitzer, M., and Hegemann, P.

(2004). Monitoring dynamic expression of nuclear genes in Chlamydomonas reinhardtii by using a synthetic luciferase reporter gene. Plant Mol Biol 55, 869-881.

Fujisaki, K., and Ishikawa, M. (2008). Identification of an Arabidopsis thaliana protein that binds to tomato mosaic virus genomic RNA and inhibits its multiplication. Virology 380, 402-411.

Gibson, L.C., Marrison, J.L., Leech, R.M., Jensen, P.E., Bassham, D.C., Gibson, M., and Hunter, C.N. (1996). A putative Mg chelatase subunit from Arabidopsis thaliana cv C24.

Sequence and transcript analysis of the gene, import of the protein into chloroplasts, and in situ localization of the transcript and protein. Plant Physiol 111, 61-71.

Goldschmidt-Clermont, M. (1998). Coordination of nuclear and chloroplast gene expression in plant cells. Int Rev Cytol 177, 115-180.

Goslings, D., Meskauskiene, R., Kim, C., Lee, K.P., Nater, M., and Apel, K. (2004).

Concurrent interactions of heme and FLU with Glu tRNA reductase (HEMA1), the target of metabolic feedback inhibition of tetrapyrrole biosynthesis, in dark- and light-grown Arabidopsis plants. Plant J 40, 957-967.

136

Harris, E.H. (1989). The Chlamydomonas sourcebook : a comprehensive guide to biology and laboratory use (San Diego: Academic Press).

Hess, W.R., Muller, A., Nagy, F., and Borner, T. (1994). Ribosome-deficient plastids affect transcription of light-induced nuclear genes: genetic evidence for a plastid-derived signal. Mol Gen Genet 242, 305-312.

Hill, R., and Bendall, F.A.Y. (1960). Function of the Two Cytochrome Components in Chloroplasts: A Working Hypothesis. Nature 186, 136-137.

Hippler, M., Redding, K., and Rochaix, J.D. (1998). Chlamydomonas genetics, a tool for the study of bioenergetic pathways. Biochim Biophys Acta 1367, 1-62.

Ikegami, A., Yoshimura, N., Motohashi, K., Takahashi, S., Romano, P.G., Hisabori, T., Takamiya, K., and Masuda, T. (2007). The CHLI1 subunit of Arabidopsis thaliana magnesium chelatase is a target protein of the chloroplast thioredoxin. J Biol Chem 282, 19282-19291.

Iliev, D., Voytsekh, O., Schmidt, E.-M., Fiedler, M., Nykytenko, A., and Mittag, M. (2006).

A Heteromeric RNA-Binding Protein Is Involved in Maintaining Acrophase and Period of the Circadian Clock. Plant Physiol. 142, 797-806.

Ishijima, S., Uchibori, A., Takagi, H., Maki, R., and Ohnishi, M. (2003). Light-induced increase in free Mg2+ concentration in spinach chloroplasts: measurement of free Mg2+ by using a fluorescent probe and necessity of stromal alkalinization. Arch Biochem Biophys 412, 126-132.

Jelen, N., Ule, J., Zivin, M., and Darnell, R.B. (2007). Evolution of Nova-dependent splicing regulation in the brain. PLoS Genet 3, 1838-1847.

Jensen, P.E., Gibson, L.C., and Hunter, C.N. (1998). Determinants of catalytic activity with the use of purified I, D and H subunits of the magnesium protoporphyrin IX chelatase from Synechocystis PCC6803. Biochem J 334 ( Pt 2), 335-344.

Johanningmeier, U. (1988). Possible control of transcript levels by chlorophyll precursors in Chlamydomonas. Eur J Biochem 177, 417-424.

Johanningmeier, U., and Howell, S.H. (1984). Regulation of light-harvesting chlorophyll-binding protein mRNA accumulation in Chlamydomonas reinhardtii. Possible involvement of chlorophyll synthesis precursors. J Biol Chem 259, 13541-13549.

Karger, G.A., Reid, J.D., and Hunter, C.N. (2001). Characterization of the Binding of Deuteroporphyrin IX to the Magnesium Chelatase H Subunit and Spectroscopic Properties of the Complexe. Biochemistry 40, 9291-9299.

Karpinski, S., Reynolds, H., Karpinska, B., Wingsle, G., Creissen, G., and Mullineaux, P.

(1999). Systemic signaling and acclimation in response to excess excitation energy in Arabidopsis. Science 284, 654-657.

Kobayashi, K., Mochizuki, N., Yoshimura, N., Motohashi, K., Hisabori, T., and Masuda, T. (2008). Functional analysis of Arabidopsis thaliana isoforms of the Mg-chelatase CHLI subunit. Photochem Photobiol Sci 7, 1188-1195.

137 Koussevitzky, S., Nott, A., Mockler, T.C., Hong, F., Sachetto-Martins, G., Surpin, M., Lim, J., Mittler, R., and Chory, J. (2007). Signals from chloroplasts converge to regulate nuclear gene expression. Science 316, 715-719.

Krause, G.H., and Weis, E. (1991). Chlorophyll Fluorescence and Photosynthesis: The Basics.

Annual Review of Plant Physiology and Plant Molecular Biology 42, 313-349.

Krieger-Liszkay, A. (2005). Singlet oxygen production in photosynthesis. J Exp Bot 56, 337-346.

Kropat, J., Oster, U., Rudiger, W., and Beck, C.F. (1997). Chlorophyll precursors are signals of chloroplast origin involved in light induction of nuclear heat-shock genes. Proc Natl Acad Sci U S A 94, 14168-14172.

Kropat, J., Oster, U., Rudiger, W., and Beck, C.F. (2000). Chloroplast signalling in the light induction of nuclear HSP70 genes requires the accumulation of chlorophyll precursors and their accessibility to cytoplasm/nucleus. Plant J 24, 523-531.

Labbé Jean-Claude , S.H., and Luis A. Rokeach (1999). Assessing the function of the Ro ribonucleoprotein complex using Caenorhabditis elegans as a biological tool. Biochem Cell Biol 77, 349–354.

Laloi, C., Stachowiak, M., Pers-Kamczyc, E., Warzych, E., Murgia, I., and Apel, K.

(2007). Cross-talk between singlet oxygen- and hydrogen peroxide-dependent signaling of stress responses in Arabidopsis thaliana. Proc Natl Acad Sci U S A 104, 672-677.

Larkin, R.M., Alonso, J.M., Ecker, J.R., and Chory, J. (2003). GUN4, a regulator of chlorophyll synthesis and intracellular signaling. Science 299, 902-906.

Lee, K.P., Kim, C., Landgraf, F., and Apel, K. (2007). EXECUTER1- and EXECUTER2-dependent transfer of stress-related signals from the plastid to the nucleus of Arabidopsis thaliana. Proc Natl Acad Sci U S A 104, 10270-10275.

Leon, P., Arroyo, A., and Mackenzie, S. (1998). Nuclear Control of Plastid and Mitochondrial Development in Higher Plants. Annu Rev Plant Physiol Plant Mol Biol 49, 453-480.

Li, J., Goldschmidt-Clermont, M., and Timko, M.P. (1993). Chloroplast-encoded chlB is required for light-independent protochlorophyllide reductase activity in Chlamydomonas reinhardtii. Plant Cell 5, 1817-1829.

Li, J., and Timko, M.P. (1996). The pc-1 phenotype of Chlamydomonas reinhardtii results from a deletion mutation in the nuclear gene for NADPH:protochlorophyllide oxidoreductase.

Plant Mol Biol 30, 15-37.

Livak, K.J., and Schmittgen, T.D. (2001). Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2-[Delta][Delta]CT Method. Methods 25, 402-408.

Luo, M., Weinstein, J.D., and Walker, C.J. (1999). Magnesium chelatase subunit D from pea: characterization of the cDNA, heterologous expression of an enzymatically active protein and immunoassay of the native protein. Plant Mol Biol 41, 721-731.

138

Marchler-Bauer, A., Anderson, J.B., Chitsaz, F., Derbyshire, M.K., DeWeese-Scott, C., Fong, J.H., Geer, L.Y., Geer, R.C., Gonzales, N.R., Gwadz, M., et al. (2009). CDD: specific functional annotation with the Conserved Domain Database. Nucl. Acids Res. 37, D205-210.

Marchler-Bauer, A., and Bryant, S.H. (2004). CD-Search: protein domain annotations on the fly. Nucl. Acids Res. 32, W327-331.

Martin, W., Rujan, T., Richly, E., Hansen, A., Cornelsen, S., Lins, T., Leister, D., Stoebe, B., Hasegawa, M., and Penny, D. (2002). Evolutionary analysis of Arabidopsis, cyanobacterial, and chloroplast genomes reveals plastid phylogeny and thousands of cyanobacterial genes in the nucleus. Proc Natl Acad Sci U S A 99, 12246-12251.

Masuda, T., and Fujita, Y. (2008). Regulation and evolution of chlorophyll metabolism.

Photochem Photobiol Sci 7, 1131-1149.

Matsumoto, F., Obayashi, T., Sasaki-Sekimoto, Y., Ohta, H., Takamiya, K., and Masuda, T. (2004). Gene expression profiling of the tetrapyrrole metabolic pathway in Arabidopsis with a mini-array system. Plant Physiol 135, 2379-2391.

Maul, J.E., Lilly, J.W., Cui, L., dePamphilis, C.W., Miller, W., Harris, E.H., and Stern, D.B. (2002). The Chlamydomonas reinhardtii plastid chromosome: islands of genes in a sea of repeats. Plant Cell 14, 2659-2679.

McKim, S.M., and Durnford, D.G. (2006). Translational regulation of light-harvesting complex expression during photoacclimation to high-light in Chlamydomonas reinhardtii. Plant Physiol Biochem 44, 857-865.

Melis, A. (1982). Kinetic Analysis of P-700 Photoconversion: Effect of Secondary Electron Donation and Plastocyanin Inhibition. ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS.

217, 536-545.

Melis, A. (1989). Spectroscopic methods in photosynthesis: photosystem stoichiometry and chlorophyll antenna size. Phil Trans R Soc London B 323, 397-409.

Melis, A., and Brown, J.S. (1980). Stoichiometry of system I and system II reaction centers and of plastoquinone in different photosynthetic membranes. Proc Natl Acad Sci U S A 77, 4712-4716.

Merchant, S.S., Prochnik, S.E., Vallon, O., Harris, E.H., Karpowicz, S.J., Witman, G.B., Terry, A., Salamov, A., Fritz-Laylin, L.K., Marechal-Drouard, L., et al. (2007). The Chlamydomonas genome reveals the evolution of key animal and plant functions. Science 318, 245-250.

Merendino, L., Falciatore, A., and Rochaix, J.D. (2003). Expression and RNA binding properties of the chloroplast ribosomal protein S1 from Chlamydomonas reinhardtii. Plant Mol Biol 53, 371-382.

Meskauskiene, R., and Apel, K. (2002). Interaction of FLU, a negative regulator of tetrapyrrole biosynthesis, with the glutamyl-tRNA reductase requires the tetratricopeptide repeat domain of FLU. FEBS Lett 532, 27-30.

139 Meskauskiene, R., Nater, M., Goslings, D., Kessler, F., op den Camp, R., and Apel, K.

(2001). FLU: a negative regulator of chlorophyll biosynthesis in Arabidopsis thaliana. Proc Natl Acad Sci U S A 98, 12826-12831.

Mochizuki, N., Brusslan, J.A., Larkin, R., Nagatani, A., and Chory, J. (2001). Arabidopsis genomes uncoupled 5 (GUN5) mutant reveals the involvement of Mg-chelatase H subunit in plastid-to-nucleus signal transduction. Proc Natl Acad Sci U S A 98, 2053-2058.

Mochizuki, N., Tanaka, R., Tanaka, A., Masuda, T., and Nagatani, A. (2008). The steady-state level of Mg-protoporphyrin IX is not a determinant of plastid-to-nucleus signaling in Arabidopsis. Proc Natl Acad Sci U S A 105, 15184-15189.

Moulin, M., McCormac, A.C., Terry, M.J., and Smith, A.G. (2008). Tetrapyrrole profiling in Arabidopsis seedlings reveals that retrograde plastid nuclear signaling is not due to Mg-protoporphyrin IX accumulation. Proc Natl Acad Sci U S A 105, 15178-15183.

Nakayama, M., Masuda, T., Bando, T., Yamagata, H., Ohta, H., and Takamiya, K. (1998).

Cloning and expression of the soybean chlH gene encoding a subunit of Mg-chelatase and localization of the Mg2+ concentration-dependent ChlH protein within the chloroplast. Plant Cell Physiol 39, 275-284.

Nott, A., Jung, H.S., Koussevitzky, S., and Chory, J. (2006). Plastid-to-nucleus retrograde signaling. Annu Rev Plant Biol 57, 739-759.

Papenbrock, J., Mock, H.P., Tanaka, R., Kruse, E., and Grimm, B. (2000). Role of magnesium chelatase activity in the early steps of the tetrapyrrole biosynthetic pathway. Plant Physiol 122, 1161-1169.

Peter, E., and Grimm, B. (2009). GUN4 Is Required for Posttranslational Control of Plant Tetrapyrrole Biosynthesis. Mol Plant, 1-13, September 2, 2009.

Peter, G.F., and Thornber, J.P. (1991). Biochemical composition and organization of higher plant photosystem II light-harvesting pigment-proteins. J Biol Chem 266, 16745-16754.

Pogson, B.J., Woo, N.S., Forster, B., and Small, I.D. (2008). Plastid signalling to the nucleus and beyond. Trends Plant Sci 13, 602-609.

Pontier, D., Albrieux, C., Joyard, J., Lagrange, T., and Block, M.A. (2007). Knock-out of the magnesium protoporphyrin IX methyltransferase gene in Arabidopsis. Effects on chloroplast development and on chloroplast-to-nucleus signaling. J Biol Chem 282, 2297-2304.

Pontoppidan, B., and Kannangara, C.G. (1994). Purification and partial characterisation of barley glutamyl-tRNA(Glu) reductase, the enzyme that directs glutamate to chlorophyll biosynthesis. Eur J Biochem 225, 529-537.

Porra, R.J., Thompson, W.A., and Kriedermann, P.E. (1989). Determination of accurate extinction coefficients and simultaneous equation for assaying chlorophyll a and b extracted with four different solvents: verification of the concentration of chlorophyll standards by atomic absorption spectroscopy. Biochimica Biophysica Acta 1989, 384-394.

Rapp, J.C., and Mullet, J.E. (1991). Chloroplast transcription is required to express the nuclear genes rbcS and cab. Plastid DNA copy number is regulated independently. Plant Mol Biol 17, 813-823.

140

Reid, J.D., and Hunter, C.N. (2004). Magnesium-dependent ATPase activity and cooperativity of magnesium chelatase from Synechocystis sp. PCC6803. J Biol Chem 279, 26893-26899.

Reid, J.D., Siebert, C.A., Bullough, P.A., and Hunter, C.N. (2003). The ATPase activity of the ChlI subunit of magnesium chelatase and formation of a heptameric AAA+ ring.

Biochemistry 42, 6912-6920.

Rochaix, J.D. (2002). Chlamydomonas, a model system for studying the assembly and dynamics of photosynthetic complexes. FEBS Lett 529, 34-38.

Rochaix, J.D. (2007). Role of thylakoid protein kinases in photosynthetic acclimation. FEBS Lett 581, 2768-2775.

Roper, J.M., and Smith, A.G. (1997). Molecular Localisation of Ferrochelatase in Higher Plant Chloroplasts. European Journal of Biochemistry 246, 32-37.

Rossel, J.B., Wilson, P.B., Hussain, D., Woo, N.S., Gordon, M.J., Mewett, O.P., Howell, K.A., Whelan, J., Kazan, K., and Pogson, B.J. (2007). Systemic and intracellular responses to photooxidative stress in Arabidopsis. Plant Cell 19, 4091-4110.

Ruckle, M.E., DeMarco, S.M., and Larkin, R.M. (2007). Plastid signals remodel light signaling networks and are essential for efficient chloroplast biogenesis in Arabidopsis. Plant Cell 19, 3944-3960.

Ruckle, M.E., and Larkin, R.M. (2009). Plastid signals that affect photomorphogenesis in Arabidopsis thaliana are dependent on GENOMES UNCOUPLED 1 and cryptochrome 1. New Phytol 182, 367-379.

Sambrook, J., E.F. Fritsch, and T. Maniatis. (1989). Molecular cloning: a laboratory manual. . Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.

Shao, N., Vallon, O., Dent, R., Niyogi, K.K., and Beck, C.F. (2006). Defects in the cytochrome b6/f complex prevent light-induced expression of nuclear genes involved in

Shao, N., Vallon, O., Dent, R., Niyogi, K.K., and Beck, C.F. (2006). Defects in the cytochrome b6/f complex prevent light-induced expression of nuclear genes involved in