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[PDF] Top 20 iPBA: a tool for protein structure comparison using sequence alignment strategies.: Structural Alphabet Alignment

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iPBA: a tool for protein structure comparison using sequence alignment strategies.: Structural Alphabet Alignment

iPBA: a tool for protein structure comparison using sequence alignment strategies.: Structural Alphabet Alignment

... available protein structures, fast and accurate structure com- parison has been ...method for structure comparison, based on a struc- tural ...alphabet. Protein ... Voir le document complet

7

Mining protein loops using a structural alphabet and statistical exceptionality.

Mining protein loops using a structural alphabet and statistical exceptionality.

... search for functional motifs is successfully guided by the search for exceptional motifs ...of structural words in proteins to see if the over- or under-representation of particular conforma- tions ... Voir le document complet

19

Improvement of protein structure comparison using a structural alphabet.

Improvement of protein structure comparison using a structural alphabet.

... our structural alignment algorithm by (i) refining the substitution matrix and (ii) designing an improved dynamic programming ...from a redundant dataset can be minimized by carrying out ... Voir le document complet

34

Protein structure analysis, prediction and flexibility in the light of a structural alphabet

Protein structure analysis, prediction and flexibility in the light of a structural alphabet

... Progressive structure-based alignment of homologous proteins: Adopting sequence comparison ...multiple protein structure alignment method based on a ... Voir le document complet

92

Extension of a local backbone description using a structural alphabet: a new approach to the sequence-structure relationship.

Extension of a local backbone description using a structural alphabet: a new approach to the sequence-structure relationship.

... method for predicting 3D protein structure relies on the progressive divergence of se- quences from a given ancestor at the same time that they preserve their functional 3D ...requires ... Voir le document complet

17

A 2D CRF Model for Sentence Alignment

A 2D CRF Model for Sentence Alignment

... from a bitext, using only length information, then trains a small IBM Model 1 based on these links, finally realigns the bitext using both length and lexical ...returns a set of 1 : 1 ... Voir le document complet

11

Structural Analysis and Improved Reactive Power Alignment for Secondary Voltage Control

Structural Analysis and Improved Reactive Power Alignment for Secondary Voltage Control

... To avoid this, new solutions were proposed like, in , e.g., [3], in which the local loops are suppressed but still a constant reactive power reference is proposed to be tracked by each generator. From the control ... Voir le document complet

7

Global alignment of protein-protein interaction networks by graph matching methods.

Global alignment of protein-protein interaction networks by graph matching methods.

... formulations for the GNA problem. The constrained GNA formulation corresponds to a situation where we have a strong a priori about which pairs can be ...by a more global objective ... Voir le document complet

15

Experimenting a Modeling Approach for Designing Organization's Strategies in the Context of Strategic Alignment

Experimenting a Modeling Approach for Designing Organization's Strategies in the Context of Strategic Alignment

... become a top-level concern in ...strategic alignment: elaboration of key indicators, target definition, monitoring, analysis, impact propagation ...strategic alignment, or correspondence between ... Voir le document complet

11

Strengths and Limits of Multiple Sequence Alignment and Filtering Methods

Strengths and Limits of Multiple Sequence Alignment and Filtering Methods

... longer a realistic option and, even when tractable, is a questionable practice as it goes against ...the sequence alignment ...filter sequence alignments prior to phylogeny inferences ... Voir le document complet

37

A novel approach for predicting protein functions by transferring annotation via alignment networks

A novel approach for predicting protein functions by transferring annotation via alignment networks

... is a critical process than pre- dicting MF GO ...a protein. Therefore, we can conclude that the feature or prop- erty of a given protein is determined by itself, whereas the relations ... Voir le document complet

17

Strategic alignment: a performance tool (an empirical study of SMEs)

Strategic alignment: a performance tool (an empirical study of SMEs)

... organizational structure, IT strategy and ...year using a questionnaire which was established by Dauphine-Cegos Laboratory and was distributed to executive managers to evaluate IT impact on firms’ ... Voir le document complet

10

Clause structure and alignment in Movima

Clause structure and alignment in Movima

... clause structure is characterized by largely fixed constituent order (predicate ...to a saliency ...in a transitive clause, direct indicating that the salient participant is the actor and the ... Voir le document complet

20

Analysis of Protein Disorder Predictions in the Light of a Protein Structural Alphabet

Analysis of Protein Disorder Predictions in the Light of a Protein Structural Alphabet

... Intrinsically-disordered protein (IDP) characterization was an amazing change of paradigm in our classical sequence-structure-function ...targeted using small molecules for therapeutic ... Voir le document complet

14

OPTIMIR, a novel algorithm for integrating available genome-wide genotype data into miRNA sequence alignment analysis

OPTIMIR, a novel algorithm for integrating available genome-wide genotype data into miRNA sequence alignment analysis

... S2 for examples). As a result, the reference library was up- graded with 96 new alternative sequences corresponding to all possible haplotypes derived from the 90 identified ...Read alignment ... Voir le document complet

14

Book Tessera Alignment

Book Tessera Alignment

... L’association des coloris à la structure de la fibre en font un produit idéal pour habiller les espaces tertiaires les plus contemporains.. De plus, chacun des 8 coloris Highlight de la [r] ... Voir le document complet

2

Protein symmetrization as a novel tool in structural biology

Protein symmetrization as a novel tool in structural biology

... OF PROTEIN SYMMETRISATION The cryoEM D6 restrained map of the best dodecameric chimera MagΔ5 was obtained at a resolution of 10 Å, as estimated by FSC ...cryoEM structure corresponds to the  ... Voir le document complet

164

RedOak: a reference-free and alignment-free structure for indexing a collection of similar genomes

RedOak: a reference-free and alignment-free structure for indexing a collection of similar genomes

... except for the newly added ...stored for the old shell k-mers, it is easy to update the order relationship associated with the new shell k-mers by applying a trivial ordered set merging ...bits ... Voir le document complet

29

Stochastic Alignment Processes

Stochastic Alignment Processes

... Stochastic Alignment Problem, aiming to study basic algorithmic aspects that govern alignment processes in unreliable stochastic ...maintain a cohesive direction of flight. In each round, each bird ... Voir le document complet

24

New assessment of a structural alphabet.

New assessment of a structural alphabet.

... the comparison with classical secondary structure assignments is not trivial as the assignment methods differ and the correspondence with PBs is not simply ...direct. For instance, the PB d has the ... Voir le document complet

13

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