[PDF] Top 20 Structure-based algorithms for protein-protein interactions
Has 10000 "Structure-based algorithms for protein-protein interactions" found on our website. Below are the top 20 most common "Structure-based algorithms for protein-protein interactions".
Structure-based algorithms for protein-protein interactions
... search for the three algorithms in the case of fitting the GroEL subunit into the ...other algorithms, which exhaustively search all the space of possible ...rotated protein. Therefore, it was ... Voir le document complet
108
Fixed-Parameter Algorithms For Protein Similarity Search Under mRNA Structure Constraints
... of protein engineering, we consider the problem of computing an mRNA sequence of maximal codon-wise similarity to a given mRNA (and consequently, to a given protein) that additionally satisfies some ... Voir le document complet
14
GeNMR: a web server for rapid NMR-based protein structure determination
... server for rapidly generating accurate 3D protein struc- tures using sequence data, NOE-based dis- tance restraints and/or NMR chemical shifts as ...coordinates for the protein within ... Voir le document complet
9
CAPRI- content-based analysis of protein structure for retrieval and indexing
... a protein may be inferred from its ...new protein architectures, predicting protein interactions such as the docking- problem (where the so-called receptor connects to the ligand) and ... Voir le document complet
12
MamA as a Model Protein for Structure-Based Insight into the Evolutionary Origins of Magnetotactic Bacteria
... conserved protein found in magnetotactic bacteria (MTB), a diverse group of prokaryotes capable of navigating according to magnetic fields – an ability known as ...responsible for magnetotaxis. Several ... Voir le document complet
18
Parallel Seed-Based Approach to Multiple Protein Structure Similarities Detection
... between protein structures is a crucial task in molecular ...internal-distances based) lower than a given threshold, if such ...suitable for detecting similar domains when com- paring multi-domain ... Voir le document complet
29
N6-methyl-adenine: an epigenetic signal for DNA-protein interactions.
... immune response in the infected animal 71,75 . Use of dam mutations, alone or combined with others, may offer unique advantages for the design of Salmonella -based live vaccines 75 . An undesirable trait, ... Voir le document complet
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Parallel seed-based approach to multiple protein structure similarities detection
... threads for computations provides substantial speedups, but also induces different and unpredictable explorations paths of the search space of the alignment ...true for 2 and 4 threads with standard ... Voir le document complet
29
A New Protein-Protein Interaction Sensor Based on Tripartite Split-GFP Association
... Fluorescence Reader (Bio-Tek), at 3 min intervals, for 15 h. The background fluorescence of a blank sample (150 ml of GFP1–9 OPT, 0.25 mg/ml and 50 ml 0.5% (w/v) BSA in TNG buffer) was subtracted from the final ... Voir le document complet
20
Generation of a versatile BiFC ORFeome library for analyzing protein-protein interactions in live Drosophila
... convenient for generating new fusions without additional fly transgenesis, swap- ping experiments require several generations, and therefore several weeks, before getting the desired BiFC-compatible fly line ( ... Voir le document complet
25
Characterization of a novel class of anti-HCV agents targeting protein-protein interactions
... selected for further validation and antiviral ...UM42811 for the sake of simplicity and readability (chemical structure shown in Figure 7A) was confirmed as a NS3/4A PPI activator in the replicate ... Voir le document complet
123
Geometric algorithms for the conformational analysis of long protein loops
... Discussion and Prospects We proposed geometric techniques aimed at providing powerful filters for conformational sampling and search methods. Our solution to the loop-closing problem is computationally efficient and ... Voir le document complet
13
Development of chemogenomic approaches for prediction of protein - ligand interactions
... 2.7.1 The molecule library A molecule library is a set of molecules, whose sizes may vary from a few hundreds to hun- dreds of thousands of grams per mol, that have been synthesized in large quantities and stored in ... Voir le document complet
160
Characterization of protein-protein interactions involved in auxin signaling pathway in tomato
... degradation for IAAs-GFP when proteins are released or are in contact with the ...nuclear structure to preserve Aux/IAA ...soluble protein fraction of ...unsuccessful. For ARF proteins, the ... Voir le document complet
158
The unexpected structure of the designed protein Octarellin V.1 forms a challenge for protein structure prediction tools.
... tested protein structure prediction servers could even remotely predict the structure we observe ...28 for the mean value of the most recent CASP10 event ( Tai et ...target for ... Voir le document complet
12
Structural basis for Fe–S cluster Assembly and tRNA thiolation mediated by IscS protein–protein interactions
... our structure is greater than ,12 A ˚ , implying that a conformational change must accompany sulfur transfer (Figure ...critical for the formation of the cognate complex, as confirmed by a partial loss of ... Voir le document complet
19
Bioluminescence Resonance Energy Transfer as a Method to Study Protein-Protein Interactions: Application to G Protein Coupled Receptor Biology
... HaloTag protein (33 kDa) with the protein of interest and the addition of a chloroalkane (HaloTag) ligand that bind rapidly and irreversibly to the HaloTag-fused ...limitation for its use is the ... Voir le document complet
22
DALIX: optimal DALI protein structure alignment
... algorithm for protein structure align- ment using DALI scoring, which is an NP-hard ...is based on comparing the inter-residue distance matrices of proteins and is the scoring model of the ... Voir le document complet
22
From Protein Corona to Colloidal Self-Assembly: The Importance of Protein Size in Protein-Nanoparticle Interactions
... eliminates the hypothesis of subunit dissociation or large destructuration upon adsorption. In addition, we can be more specific about the type of self-assembly observed here. HbAm and NPs form open network structures. ... Voir le document complet
42
Algorithm engineering for optimal alignment of protein structure distance matrices
... indicate, for example, a similar biological function or a common evolutionary ...alignment, for which polynomial algorithms exist, structural alignment is computationally ...alignment ... Voir le document complet
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