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[PDF] Top 20 Species specific amino acid sequence - Protein local structure relationships: An analysis in the light of a structural alphabet

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Species specific amino acid sequence - Protein local structure relationships: An analysis in the light of a structural alphabet

Species specific amino acid sequence - Protein local structure relationships: An analysis in the light of a structural alphabet

... from the other species, and also from the expected view of AAS-PS (NR, see Supplementary material ...5). The last remark is promising indeed. The extensive genetic diversity ... Voir le document complet

37

Species specific amino acid sequence-protein local structure relationships: An analysis in the light of a structural alphabet.: species‟ sequence - structure relationship

Species specific amino acid sequence-protein local structure relationships: An analysis in the light of a structural alphabet.: species‟ sequence - structure relationship

... comparison in terms of PBs As mentioned earlier, slight differences can be observed while analyzing secondary structures, but still same states are clustered ...across species. The ... Voir le document complet

36

Structural Alphabet: From a Local Point of View to a Global Description of Protein 3D Structures

Structural Alphabet: From a Local Point of View to a Global Description of Protein 3D Structures

... Protein classes. As noted by Thornton and co-workers, the secondary structures form particular motifs that define the global protein topology, ...e.g. the TIM barrel fold [141]. This ... Voir le document complet

70

Use of a structural alphabet for analysis of short loops connecting repetitive structures.

Use of a structural alphabet for analysis of short loops connecting repetitive structures.

... analyzed the secondary structure assignments. Use of five different assignment methods (DSSP, DEFINE, PCURVE, STRIDE and PSEA) showed the absence of consensus: 20% of the ... Voir le document complet

14

Amino Acid Sequence of the Penicillin-Binding Protein/DD-Peptidase of Streptomyces K15. Predicted Secondary Structures of the Low Mr Penicillin-Binding Proteins of Class A

Amino Acid Sequence of the Penicillin-Binding Protein/DD-Peptidase of Streptomyces K15. Predicted Secondary Structures of the Low Mr Penicillin-Binding Proteins of Class A

... low-M, PBPs of known primary structure has led to the conclusion that (1) the Streptomyces K15 PBP, the Escherichia coli PBPs 5 and 6 (Broome-Smith et al., 1988), the Bacillus subtilis P[r] ... Voir le document complet

8

An analysis of representations for protein structure prediction

An analysis of representations for protein structure prediction

... where i represents the type of secondary structure; TP is the number of true positives (correct predictions of that secondary structure); TN is the number of true negat[r] ... Voir le document complet

279

A d-Amino Acid at the N-Terminus of a Protein Abrogates Its Degradation by the N-End Rule Pathway

A d-Amino Acid at the N-Terminus of a Protein Abrogates Its Degradation by the N-End Rule Pathway

... into the cytosol of ...characterized the N-end rule as it relates to the intracellular stability of ...to the N-end rule, the identity of the N-terminal ... Voir le document complet

9

Influence of amino acid sequence in a peptidic Cu+-responsive luminescent probe inspired by the copper chaperone CusF.

Influence of amino acid sequence in a peptidic Cu+-responsive luminescent probe inspired by the copper chaperone CusF.

... intense in the case of the Aib variant. Altogether, the Asn-to-Aib mutation seems to limit conformational motions of the peptide and to stabilize a certain ...to ... Voir le document complet

9

Numerical Encodings of Amino Acids in Multivariate Gaussian Modeling of Protein Multiple Sequence Alignments

Numerical Encodings of Amino Acids in Multivariate Gaussian Modeling of Protein Multiple Sequence Alignments

... down a protein sequence, amino acids are usually pictured either with a one-letter code, or a three-letter ...representations of the amino acid name, ... Voir le document complet

22

A new intersecting tunnel structure in the AIMIII[PO3(OH)]2 series for AI = Ag, MIII = In : Analysis of structural relationships

A new intersecting tunnel structure in the AIMIII[PO3(OH)]2 series for AI = Ag, MIII = In : Analysis of structural relationships

... A new intersecting tunnel structure in the A I M III [PO 3 (OH)] 2 series for A I ¼ Ag, M III ¼ In: Analysis of structural relationships Anne ... Voir le document complet

10

A simple derivation of the distribution of pairwise local protein sequence alignment scores

A simple derivation of the distribution of pairwise local protein sequence alignment scores

... development of this method includes the exact computation of each residue ...and of gap penalty so as to obtain a rapid calculation of the alignment score statistics ... Voir le document complet

6

Analysis of the Structure-Properties Relationships of Different Multiphase Systems Based on Plasticized Poly(Lactic Acid)

Analysis of the Structure-Properties Relationships of Different Multiphase Systems Based on Plasticized Poly(Lactic Acid)

... literature, the diffusion of the gas mole- cules is mainly due to the free volume in the polymer matrix [ 34 – 36 ...]. The addition of plasticizer provokes ... Voir le document complet

11

Kinetid structure in sponge choanocytes of Spongillida in the light of evolutionary relationships within Demospongiae

Kinetid structure in sponge choanocytes of Spongillida in the light of evolutionary relationships within Demospongiae

... and the features of the kinetid structure in their choanocytes ( Pozdnyakov & Karpov, 2015 ...Confirmation of molecular kinship would explain all the marked ... Voir le document complet

19

Specificity of amino acid regulated gene expression: Analysis of genes subjected to either complete or single amino acid deprivation

Specificity of amino acid regulated gene expression: Analysis of genes subjected to either complete or single amino acid deprivation

... Regardless of the mechanism, the results indicate that incubation of HepG2 cells in KRB triggers an AARE-independent activation of the SNAT2 ...involving the ... Voir le document complet

17

Light enhanced amino acid uptake by dominant bacterioplankton groups in surface waters of the Atlantic Ocean.

Light enhanced amino acid uptake by dominant bacterioplankton groups in surface waters of the Atlantic Ocean.

... Keeping in mind that LNA cells are twice as abundant as Prochlorococcus cells ...b), the light stimulated increase in amino acid uptake of these two populations is ... Voir le document complet

10

The complete amino acid sequence of the Zn2+-containing D-alanyl-D-alanine-cleaving carboxypeptidase of streptomyces albus G

The complete amino acid sequence of the Zn2+-containing D-alanyl-D-alanine-cleaving carboxypeptidase of streptomyces albus G

... The ordering of the cyanogen bromide peptide fragments has been carried out (a) by submitting the i'-carboxymethylated protein to complete tryptic digestion and labe[r] ... Voir le document complet

18

A Local Frequency Analysis of Light Scattering and Absorption

A Local Frequency Analysis of Light Scattering and Absorption

... min) of fluence spectrum & Camera rays sample density Inset: Equal time comparison (25min) ...propose a frequency analysis of light transport in participating media, a ... Voir le document complet

18

Designing Well-Structured Cyclic Pentapeptides Based on Sequence–Structure Relationships

Designing Well-Structured Cyclic Pentapeptides Based on Sequence–Structure Relationships

... characterize the structural ensembles of hundreds of CPs to determine which CPs are well structured, and ultimately to understand how CP sequences control ...determination of ... Voir le document complet

24

Global analysis of VHHs framework regions with a structural alphabet: VHH FRs structures

Global analysis of VHHs framework regions with a structural alphabet: VHH FRs structures

... Introduction The antibodies (Ab) or immunoglobulins (Ig) are glycoproteins that play a central role in the immune ...allow the recognition of antigens, the recruitment ... Voir le document complet

31

Sequence-structure relationships in polysaccharide co-polymerase (PCP) proteins

Sequence-structure relationships in polysaccharide co-polymerase (PCP) proteins

... Department of Biochemistry, McGill University, 3655 Promenade Sir William Osler, Montre´al, Que´bec H4P 2R2, Canada 3 Biotechnology Research Institute, National Research Council, 6100 Royalmount Avenue, Montre´al, ... Voir le document complet

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