[PDF] Top 20 A simple derivation of the distribution of pairwise local protein sequence alignment scores
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A simple derivation of the distribution of pairwise local protein sequence alignment scores
... all sequence alignments methods compute a score s(a,b) between two compared sequences a and ...is a measure of similarity between the two sequences and help to distinguish ... Voir le document complet
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Evolution of biological sequences implies an extreme value distribution of type I for both global and local pairwise alignment scores.
... tuted. The similarity of i in an initial sequence compared with residues at the same position in protein descendants is therefore either that of identity (the diagonal ... Voir le document complet
11
iPBA: a tool for protein structure comparison using sequence alignment strategies.: Structural Alphabet Alignment
... Computing pairwise alignment The alignment method implemented in this server repre- sents a significant improvement over our earlier work ...In the previous work, the PB ... Voir le document complet
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The LEDA galaxy distribution : I. Maps of the Local Universe
... the Galactic Plane the extinction is very patchy and is not always well traced with the Schlegel ...studies of completness to cut this zone out. On Figure 1 we plot the magnitude ... Voir le document complet
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On subset seeds for protein alignment
... score of three positions), the expectation, computed according to the Bernoulli sequence model, of the number of neighbors of a key is ...to the hash ... Voir le document complet
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Algorithm engineering for optimal alignment of protein structure distance matrices
... structural alignment algorithms can be divided into heuristics [7,11,13] or exact methods ...While the first are typically fast, they do not provide a theoretical quality guarantee of their ... Voir le document complet
15
The derivation of efficient sets
... This algorithm essentially involves the solution of one quadratic programming problem and then one additional pivot step in the linear programming sense for each corner p[r] ... Voir le document complet
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On the existence of Pairwise stable weighted networks
... which the relationships are measured by ...quantify the weight of a relationship in a continuous way (it can measure a debt, the strength of friendship, some level ... Voir le document complet
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Homing Sequence Derivation with Quantified Boolean Satisfiability
... and the 2QBF solver in Berkeley ABC [3, ...by the tool ...all the codes are used as discussed in Section ...minimize the transition relation of each ...convert the formulas into ... Voir le document complet
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The Distribution of heights of binary trees and other simple trees
... is a multi-disciplinary open access archive for the deposit and dissemination of sci- entific research documents, whether they are pub- lished or ...not. The documents may come from teaching ... Voir le document complet
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A SIMPLE ALGORITHM FOR THE COMPUTATION OF THE SPECTRAL DISTRIBUTION OF THE SOLAR IRRADIANCE AT SURFACE
... to the HelioClim databases: HelioClim-1 9, 10 and HelioClim-3 11 that contain daily total irradiation for Europe since ...yields the Eurosun database covering the period 1988-2007 for supporting ... Voir le document complet
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Local stability of perfect alignment for a spatially homogeneous kinetic model
... in a neighborhood of −x ′ ∗ , just like the midpoint model. A natural extension of Theorem ...small, the solution of the kinetic equation with a kernel ... Voir le document complet
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Strengths and Limits of Multiple Sequence Alignment and Filtering Methods
... Parsimony scores, tree likelihoods and tree posterior probabilities are meaningless without this ...alignments of those highly reliable sequences were diligently curated ...In the past two decades, ... Voir le document complet
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DALIX: optimal DALI protein structure alignment
... From the 359 short SCOPCath alignments of domains from the same family, 143 (40%) were solved to optimality within the time limit of 1800 seconds, and most within a few ...by ... Voir le document complet
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Scoring Methods for Building Genotypic Scores: An Application to Didanosine Resistance in a Large Derivation Set
... building a score from a data set is its validation. Such scores are generally highly data-dependent, and perform better than other scores or existing IS on the data set that was used to ... Voir le document complet
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Where does the alignment score distribution shape come from?
... making the hypothesis that the over- representation of this class of probability distributions when comparing biological sequences is a conse- quence of both the nature ... Voir le document complet
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A simple proof of the completeness of APAL
... K a ϕ IRU ¬K a ¬ϕ hϕiψ IRU ¬[ϕ]¬ψ DQG ✸ϕ IRU ¬✷¬ϕ :H DGRSW WKH VWDQGDUG UXOHV IRU RPLVVLRQ RI WKH SDUHQWKHVHV *LYHQ D IRUPXOD ϕ WKH VHW RI DOO VWULFW VXEIRUPXODV RI ϕ LV GHQRWHG E\ Sub(ϕ) DQ ... Voir le document complet
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A simple proof of the completeness of APAL
... K a ϕ | [ϕ]ψ | ...K a ϕ hϕiψ DQG ✸ϕ DUH REWDLQHG DV DEEUHYLDWLRQV ˆ K a ϕ IRU ¬K a ¬ϕ hϕiψ IRU ¬[ϕ]¬ψ DQG ✸ϕ IRU ¬✷¬ϕ :H DGRSW WKH VWDQGDUG UXOHV IRU RPLVVLRQ RI WKH SDUHQWKHVHV *LYHQ D ... Voir le document complet
15
Distribution and sequence analysis of a family of type III-dependent effectors correlate with the phylogeny of Ralstonia solanacearum strains
... insertion of the IS occurred. The corre- sponding functional gene codes for a protein of 386 amino acid (aa) residues, whereas popP1 and popP2 encode 368 and 483 aa proteins, ... Voir le document complet
11
A Minplus Derivation of the Fundamental Car-Traffic Law
... in a circular road of unitary length. In the deterministic case the cars want to move at the given velocity v and must respect a security distance with the car ...In ... Voir le document complet
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