[PDF] Top 20 In silico prediction of protein flexibility with local structure approach
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In silico prediction of protein flexibility with local structure approach
... definition of protein flexibility (i) not only taken from crystallographic data, but also (ii) from Root Mean Square Fluctuation (RMSFs) observed in Molecular Dynamics ...representation ... Voir le document complet
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In Silico Peptide Ligation: Iterative Residue Docking and Linking as a New Approach to Predict Protein-Peptide Interactions
... difficulty of obtaining direct experimental structural biology data, prediction of those interactions is of crucial interest for the rational development of new drugs, notably to fight ... Voir le document complet
15
Species specific amino acid sequence-protein local structure relationships: An analysis in the light of a structural alphabet.: species‟ sequence - structure relationship
... knowledge of three dimensional structures of proteins gives valuable insights into their ...functions. Prediction of different features of protein structure like secondary ... Voir le document complet
36
Discrete analysis of camelid variable domains: sequences, structures, and in-silico structure prediction
... assigned with the most widely used algorithm, namely DSSP (CMBI version 2000) with default parameters (Kabsch et Sander ...83). Protein Blocks (PBs) were also ...composed of 16 local ... Voir le document complet
29
A new prediction strategy for long local protein structures using an original description.
... development of a new strategy for protein local structure prediction using LSPs, ii) the proposal of an index for directly assessing the relevance of the prediction ... Voir le document complet
54
Species specific amino acid sequence - Protein local structure relationships: An analysis in the light of a structural alphabet
... knowledge of three dimensional structures of proteins gives valuable insights into their ...functions. Prediction of different features of protein structure like secondary ... Voir le document complet
37
In silico local structure approach: A case study on Outer Membrane Proteins.
... detection of Outer Membrane Proteins (OMP) in whole genomes is an actual question, their sequence characteristics have thus been intensively ...class of protein displays a common β-barrel ... Voir le document complet
42
The unexpected structure of the designed protein Octarellin V.1 forms a challenge for protein structure prediction tools.
... underreported in the field, it is hard to determine the maximum protein size achievable with de novo ...length of ‘‘n” amino acids of artificial sequence protein, we have then 20 ... Voir le document complet
12
Supervised learning to tune simulated annealing for in silico protein structure prediction
... likelihood of (φ(s), o(s)). This strategy leads to the creation of a p θ (o | s) that will, at each iteration of SA, select an operator that well decreases (on average) the energy of the ... Voir le document complet
6
An Overview of in Silico Methods for the Prediction of Ionizing Radiation Resistance in Bacteria
... results in order to compute the final prediction ...Similarity Approach In [28], the authors present ABSim, an algorithm that discriminates bags by measuring the similarity between each ... Voir le document complet
16
Parallel seed-based approach to protein structure similarity detection
... L’archive ouverte pluridisciplinaire HAL, est destinée au dépôt et à la diffusion de documents scientifiques de niveau recherche, publiés ou non, émanant des établissements d’enseignemen[r] ... Voir le document complet
11
Parallel seed-based approach to multiple protein structure similarities detection
... list of records which are only lower bounds of the global records found so far by all ...result in an increase of the amount of ...list of records and to keep it ...entries ... Voir le document complet
29
Parallel Seed-Based Approach to Multiple Protein Structure Similarities Detection
... between protein structures is a crucial task in molecular biology. Most of the existing tools require proteins to be aligned in order-preserving way and only find single alignments even when ... Voir le document complet
29
Large-scale prediction of protein-protein interactions from structures
... review of the problem of predict- ing interactions using structural ...information. In this study, we are interested in developing methods to predict whether two proteins ...analysis of ... Voir le document complet
10
In silico molecular target prediction unveils mebendazole as a potent MAPK14 inhibitor
... concept of polypharmacology, which involves the interaction of drug molecules with multiple targets, has emerged in recent years as a new paradigm in drug development [1,2] ... Voir le document complet
18
Protein enriched pasta : impact of protein network structure on the in-vitro protein digestibility
... produced with durum wheat semolina. It contains 13% (db) of proteins, but is deficient in some amino ...acids. Protein enriched (17%) pasta with better amino acid profile were produced ... Voir le document complet
3
A Crystal Structure of the Dengue Virus NS5 Protein Reveals a Novel Inter-domain Interface Essential for Protein Flexibility and Virus Replication
... (B) Structure alignment of the homology models of NS5 from JEV, WNV, YFV, and TBEV based on DENV3 NS5 crystal structure (this work), at the interface ...List of DNA primers. (A) Primers ... Voir le document complet
28
Modeling Spontaneous Metastasis following Surgery: An In Vivo-In Silico Approach
... goodness of fit. However, this would add at least one degree of freedom (thus deteriorating the reliability of the estimation) and invalidate the convolution formula used for computation of ... Voir le document complet
58
Influence of assignment on the prediction of transmembrane helices in protein structures.
... superimposition of the 20 different structural models using PyMol software (DeLano ...distribution of helical residues propensities along the protein ...regions of the transmembrane domain. ... Voir le document complet
37
Identification of an in vivo orally active dual-binding protein-protein interaction inhibitor targeting TNFα through combined in silico/in vitro/in vivo screening
... lines of evidence suggest a pathologic role of cytokine overproduction in the pathogenesis of SSc, par- ticularly in fibroblast activation, collagen synthesis, and subsequent ... Voir le document complet
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