[PDF] Top 20 Recombination in eukaryotic single stranded DNA viruses
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Recombination in eukaryotic single stranded DNA viruses
... RNA viruses, the evolution, dispersal, and population growth/decline rates of ssDNA viruses all occur within similar time-frames such that histories of movements and population size variations of many ssDNA ... Voir le document complet
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Chimeric viruses blur the borders between the major groups of eukaryotic single-stranded DNA viruses.
... all eukaryotic ones (namely Anelloviridae, Bidnaviridae, Circoviridae, Geminiviridae, Nanoviridae and Parvovriridae) pack their genomes into small icosahedral capsids, constructed from multiple copies of a ... Voir le document complet
10
Two distinct conformational states define the interaction of human RAD51‐ATP with single‐stranded DNA
... of DNA damage is crucial for chromosome integ- rity, since it prevents mutations, chromosomal aberrations and errors in essential processes such as transcription, replication and chromosome segregation ... Voir le document complet
14
Acheta domesticus Volvovirus, a Novel Single-Stranded Circular DNA Virus of the House Cricket
... homogenized in 20 ml of a 3:1 mixture of phosphate-buffered saline (PBS) and carbon tet- ...putative viruses were pelleted by centrifugation for ...pended in a small volume of Tris-EDTA (TE) buffer ... Voir le document complet
2
Initiation of DNA double strand break repair: signaling and single-stranded resection dictate the choice between homologous recombination, non-homologous end-joining and alternative end-joining
... A DNA double strand break (DSB) is a highly toxic lesion, which can generate genetic instability and pro- found genome ...gous recombination (HR) and non-homologous end-joining ...by ... Voir le document complet
21
Gene Expression Noise Produces Cell-to-Cell Heterogeneity in Eukaryotic Homologous Recombination Rate
... noise in gene expression on cellular response to DNA damage was investigated in Escherichia coli by monitoring the impact of expression variation of the Ada protein in response to DNA ... Voir le document complet
13
Recombination every day: abundant recombination in a virus during a single multi-cellular host infection
... present in a CaMV population after a single passage in its host plant were identified as recombinants, and these data allowed us to infer a per nucleotide per generation recombination rate on ... Voir le document complet
8
Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes
... organisms in a population may be infected by ...bacteria in the TOP and GOS data sets, respectively) suggests that such single virus genomics approaches will be helpful in analyzing ... Voir le document complet
19
“ISA-Lation” of Single-Stranded Positive-Sense RNA Viruses from Non-Infectious Clinical/Animal Samples
... For each virus defined above, the pCMV was amplified by PCR from a previously available plasmid [ 13 ] using a forward specific primer and a reverse primer extended with the first ~twenty nucleotides (nt) of the viral ... Voir le document complet
11
Weaving DNA strands: structural insight on ATP hydrolysis in RecA-induced homologous recombination
... protocols. In addition, a 100- ns simulation was independently performed starting from a three-stranded system with two artificially reversed base ...used in-house python scripts based on the PTools ... Voir le document complet
12
Human RAD52 Captures and Holds DNA Strands, Increases DNA Flexibility, and Prevents Melting of Duplex DNA: Implications for DNA Recombination
... tary single-stranded DNA (ssDNA). In-depth knowl- edge of RAD52-DNA interaction is required to under- stand how its activity is integrated in DNA repair ...with ... Voir le document complet
20
Mapping replication origin sequences in eukaryotic chromosomes.
... where DNA replication ...utilized in the last few decades to map replication initiation sites is provided in the accompanying Overview (Best Practices For Mapping Replication Origins In ... Voir le document complet
22
Advanced Characterization of DNA Molecules in rAAV Vector Preparations by Single-stranded Virus Next-generation Sequencing
... adeno-associated viruses (rAAVs) 1,2 have helped to promote gene therapy for the treatment of genetic and acquired ...results in a heterogeneous product that is particularly complex to ...characterize. ... Voir le document complet
12
"Megavirales", a proposed new order for eukaryotic nucleocytoplasmic large DNA viruses
... nm in diameter) that are comprised of a single, homologous double β barrel jelly roll protein [21] and encapsidate a single double-stranded DNA molecule ranging in size from 100 ... Voir le document complet
9
High-resolution AFM imaging of single-stranded DNA-binding (SSB) protein--DNA complexes
... INTRODUCTION Single-stranded binding (SSB) proteins bind with a high affinity to single-stranded DNA (ssDNA), which is a transient state in many DNA metabolic processes such ... Voir le document complet
8
Wide spectrum and high frequency of genomic structural variation, including transposable elements, in large double-stranded DNA viruses
... deletion in the case of Reads 1 and 2 and a duplication for Read ...a single SV because none of the SVs have the exact same ...dsDNA viruses sequenced only with Illumina) to be retained, none of the ... Voir le document complet
17
Bound or free: interaction of the C-terminal domain of Escherichia coli single-stranded DNA-binding protein (SSB) with the tetrameric core of SSB.
... domain in an intermolecular experiment, we performed microscale thermophoresis (MST) experiments using a fluorescently tagged SSB mutant in which the eight C-terminal residues were deleted to allow binding ... Voir le document complet
10
Heat degradation of eukaryotic and bacterial DNA: an experimental model for paleomicrobiology.
... J774 DNA and M. smegmatis DNA One-hour incubation of ...resulted in cell death as indicated by the absence of ...J774 DNA and M. smegmatis negative control DNA (without heat exposure) ... Voir le document complet
7
RAD50 promotes DNA repair by homologous recombination and restrains antigenic variation in African trypanosomes
... is considered a minor reaction 25 . In trypanosomes both transcriptionally active and silent 78 (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without ... Voir le document complet
38
Genome sequence of SG33 strain and recombination between wild-type and vaccine myxoma viruses
... Genome Sequence of SG33 Strain and Recombination between Wild-Type and Vaccine Myxoma Viruses Christelle Camus-Bouclainville, Magalie Gretillat, Robert Py, Jacqueline Gelfi, Jean-Luc Guér[r] ... Voir le document complet
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