[PDF] Top 20 Modeling protein evolution using secondary structures
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Modeling protein evolution using secondary structures
... the modeling of the evolution of a given protein family, and as a result this project intends to achieve three ...accurately modeling protein evolution when used in concert with ... Voir le document complet
82
Carotenoid translocation and protein evolution in cyanobacterial photoprotection
... OCP O (Thurotte et al., 2017). Less is known about the interaction of FRP with the bound OCP R . None of mutations tested until now have prevented the FRP- induced acceleration of OCP detachment from PBS (Thurotte et ... Voir le document complet
270
Amide I’-II’ 2D IR spectroscopy provides enhanced protein secondary structural sensitivity
... between pump pulses ( 1 ) resolves the 2D spectrum along the 1 axis. Structure Based Modeling. Modeling of amide I’-II’ spectra drew on idealized structures for an anti-parallel sheet, helix, ... Voir le document complet
28
A new prediction strategy for long local protein structures using an original description.
... For 11-residue loops, after sampling and selection of the best structural candidate, the method implemented in Modeller achieves an average global RMSD value of 5.5 Å, LOOPY 3.52 Å, RAPPER 4.94 Å, PLOP 1.00 Å and ... Voir le document complet
54
Functionalization control of porous silicon optical structures using reflectance spectra modeling for biosensing applications
... the evolution of the refractive index of the PS layers as a function of wavelength at different biding steps which has been deduced from volume fractions ...(n) evolution versus wavelength for each step of ... Voir le document complet
22
Protein secondary structure assignment revisited: a detailed analysis of different assignment methods.
... in protein structures: the α -helix [1] and the β -sheet [2] which turned out to be major features of protein ...architecture. Secondary structures, because they allow a simple and ... Voir le document complet
18
Protein structure modeling using backbone chemical shifts
... Resonance-Based Modeling and Refinement of Protein Three-Dimensional Structures and Their ...a protein is essential to study its interactions and understand its mode of ...the secondary ... Voir le document complet
1
Modeling and predicting super-secondary structures of transmembrane beta-barrel proteins
... transmembrane protein super-secondary structure based on a variety of potential ...permuted structures, thus giving more complete information on the folded ... Voir le document complet
120
Automatic Classification of Protein Structures Using the Maximum Contact Map Overlap Metric
... each using a mix of expert knowledge and automatic methods, agree in their superfamily ...6759 structures, we added these filtered structures for our evaluation in order to have a much larger, ... Voir le document complet
21
Mixed dimensional modeling of reinforced structures
... 4 Mixing lineic and volumic models 4.1 Correction scheme It was shown in section 2 that X-FEM can be used to obtain a volumic representation of the reinforcements with meshes which do not need to coincide with their ... Voir le document complet
39
Edge impact modeling on stiffened composite structures
... these structures could be significantly damaged by a foreign object and at the same time the damage occurring might remain undetected by visual inspection [1–4] ... Voir le document complet
16
Harnessing intrinsic fluorescence for typing of secondary structures of DNA
... of secondary structures of the latter ( 30 , 31 ), engendering a skewing of the screening re- ...the secondary structure of oligonucleotides and can be used as structural reporters in a variety of ... Voir le document complet
17
Protein Peeling 2: a web server to convert protein structures into series of protein units.
... ( http://jmol.sourceforge.net/ ) (cf. Figure 2e). This viewer allows observing the entire colored protein in terms of PUs. The user can easily interact with such a description. A classical static representation ... Voir le document complet
11
Continuum Modeling of Secondary Rheology in Dense Granular Materials
... Next, we apply our nonlocal model to the problem of secondary rheology, by using finite-element calculations in the commercial package A BAQUS /S TANDARD [26] . For computational efficiency, we consider a ... Voir le document complet
6
Phylogenetic structural modeling of molecular evolution
... whule sampling from the prior of a (distinct) full 61-dimeiisional codon frequency vector. At the other end of the path. the vector of nucleotide frequencies used to approximate codon fr[r] ... Voir le document complet
280
Investigative modeling of new pathways for secondary organic aerosol formation
... 4 Conclusions and recommendations The partitioning of many organic compounds is extremely sensitive to LWC because water is an abundant absorbing medium in the ambient atmosphere. Water also facilitates the partition ... Voir le document complet
19
Electromagnetic modeling of large and non-uniform planar array structures using Scale-Changing Technique (SCT)
... des structures périodiques, par exemple la méthode des moments (MOM) utilisés dans le domaine spectral pour les structures multi-échelles [Mittra88] [Wan95], méthode des éléments finis (FEM) [Bardi02] et ... Voir le document complet
142
A bioinformatic web server to cut protein structures in terms of Protein Units.
... of protein cutting Figures 4 and 5 show the cutting of dialkylglycine decarboxylase through Protein Peeling approach (PDB code ...the protein into two much misbalanced PUs (1-26 and ... Voir le document complet
24
Modeling of user requirements using product modeling
... requirement modeling and those of service life prediction, life cycle economics, maintenance management, and risk ...concept) modeling; however to date, there is no conceptual model and little vocabulary to ... Voir le document complet
10
Edge impact modeling on stiffened composite structures
... these studies were the starting point of the edge impact modeling developed in this paper. The typical load–displacement curve of composite laminate under progressive crushing is shown in Fig. 2 a [13,14] , where ... Voir le document complet
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