[PDF] Top 20 Mining protein loops using a structural alphabet and statistical exceptionality.
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Mining protein loops using a structural alphabet and statistical exceptionality.
... developed a simple and accurate method that allows the description and analysis of the structures of short and long loops using structural motifs without restriction on ... Voir le document complet
19
Dynamics of protein structures and its impact on local structural behaviors
... is a highly flexible ...3.33 and 0. 4.4 Conclusions and future perspectives The MD simulations of Calf-1 domain allowed to demonstrate more or less pronounced structural changes in the wild ... Voir le document complet
294
A reduced amino acid alphabet for understanding and designing protein adaptation to mutation.
... on structural and functional properties of ...in a reliable set would be helpful to limit the number of ...experimental and theoretical studies have suggested that the full sequence complexity ... Voir le document complet
27
Extension of a local backbone description using a structural alphabet: a new approach to the sequence-structure relationship.
... 3D protein structure relies on the progressive divergence of se- quences from a given ancestor at the same time that they preserve their functional 3D ...alignment and 3D structure targets ... Voir le document complet
17
Exploring the potential of a structural alphabet-based tool for mining multiple target conformations and target flexibility insight
... macromolecules and their dynamic properties are crucial to many biological ...partners and is essential for protein function, e.g., enzyme catalysis and activity regulation [ 1 – 3 ...the ... Voir le document complet
30
iPBA: a tool for protein structure comparison using sequence alignment strategies.: Structural Alphabet Alignment
... methodology and the use of specialized PB substitution matrices has greatly enhanced the quality of alignments and the mining ...as a structure compari- son tool ...have a better RMSD ... Voir le document complet
7
Improvement of protein structure comparison using a structural alphabet.
... our structural alignment algorithm by (i) refining the substitution matrix and (ii) designing an improved dynamic programming ...superfamilies and families in PALI database {Balaji, 2001 #76; Gowri, ... Voir le document complet
34
Exploring the use of a structural alphabet for a structural prediction of protein loops
... rank, and 67% are within the 5 best ...the loops using a score based, per class, on the frequency of the amino-acids at each ...showed a sensitivity larger than ...predictable ... Voir le document complet
20
Preparation and characterization of bacterial protein complexes for structural analysis
... the protein complex during crystallization screening can mean practically that weaker complexes (those having high micromolar affinity) have a relatively low probability of yielding ...complex. ... Voir le document complet
44
Geometric algorithms for the conformational analysis of long protein loops
... Several structural elements, and mainly loop 3 (residues 183–262), restrain the mobility of loop ...simulate a possible conformational change of this chain or even of the whole loop ...as a ... Voir le document complet
13
Structural and biochemical analyses of a surface array protein of Campylobacter fetus
... Vous avez des questions? Nous pouvons vous aider. Pour communiquer directement avec un auteur, consultez la première page de la revue dans laquelle son article a été publié afin de trouver ses coordonnées. Si vous ... Voir le document complet
10
Using a SEEK filter as data assimilation kernel in NEMOVAR inner loops
... NEMO and in phase with the latest ...from a larger panel of DA tools. The VODA task 3.3 is a preliminary step in this ...building and execution operations have been reorganized in three ... Voir le document complet
45
Statistical study of a large structural file based on the Mendeleev table
... L’archive ouverte pluridisciplinaire HAL, est destinée au dépôt et à la diffusion de documents scientifiques de niveau recherche, publiés ou non, émanant des établissements d’enseignemen[r] ... Voir le document complet
7
Protein Structural Annotation: Multi-Task Learning and Feature Selection
... still a subject under heavy ...machines and extremely randomized trees, and we proposed a forward feature function selection algorithm that we applied on the standard benchmark dataset ...tune ... Voir le document complet
135
Fusion of statistical and structural information for flowchart recognition
... both statistical and structural infor- mation were ...introduced statistical information in a bidimensional syntactic analyzer by defining an operator that allows optional activation of ... Voir le document complet
6
Role of Tau as a Microtubule-Associated Protein: Structural and Functional Aspects
... rate, and longer lag time specifically for the 0N 4R Tau isoform, compared to the 1N and 2N that are behaving as the wild-type Tau ( Mutreja et ...to a differential effect of conformational changes ... Voir le document complet
15
Structural Determinants of Cold Adaptation and Stability in a Large Protein
... reversibly and without a stable intermediate between the native and the unfolded states, have allowed re- searchers to establish the thermodynamic stability function accounting for the Gibbs energy ... Voir le document complet
6
Protein symmetrization as a novel tool in structural biology
... fusion protein by a rigid body alignment of the target and template subunits via the linker connection (§ ...one and characterized their heterogeneity by biophysical techniques, seeking the ... Voir le document complet
164
A PROPOSAL OF USING DEVS MODEL FOR PROCESS MINING
... with using recorded historical information and produce a model for ...process mining, many models can be selected as the resulting model for business process for example workflow nets ... Voir le document complet
8
Distinguish Dynamic Basic Blocks by Structural Statistical Testing
... perform a uni- form of test data that satisfy path ...of a constraint problem with the same probabil- ...is a NP-hard problem [11]. Rejection method [13] is a classical way to address this ... Voir le document complet
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