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[PDF] Top 20 Improvement of protein structure comparison using a structural alphabet.

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Improvement of protein structure comparison using a structural alphabet.

Improvement of protein structure comparison using a structural alphabet.

... efficiency of our structural alignment algorithm by (i) refining the substitution matrix and (ii) designing an improved dynamic programming ...distributions of pairwise domain alignments across ... Voir le document complet

34

iPBA: a tool for protein structure comparison using sequence alignment strategies.: Structural Alphabet Alignment

iPBA: a tool for protein structure comparison using sequence alignment strategies.: Structural Alphabet Alignment

... number of available protein structures, fast and accurate structure com- parison has been ...for structure comparison, based on a struc- tural ...alphabet. Protein ... Voir le document complet

7

CSA: Comprehensive comparison of pairwise protein structure alignments

CSA: Comprehensive comparison of pairwise protein structure alignments

... (Comparative Structural Alignment), the first web server for com- prehensive comparison of pairwise protein structure alignments at single residue ...advantages of alignments that ... Voir le document complet

16

Protein structure analysis, prediction and flexibility in the light of a structural alphabet

Protein structure analysis, prediction and flexibility in the light of a structural alphabet

... 2fox_: JACKLMMMMMMMMMMMMM Tyagi M, Sharma P, Swamy CS, Cadet F, Srinivasan N, de Brevern AG, Offmann B (2006) Protein Block Expert (PBE): a web-based protein structure analysis server ... Voir le document complet

92

Mining protein loops using a structural alphabet and statistical exceptionality.

Mining protein loops using a structural alphabet and statistical exceptionality.

... Perspective of functional-motif identification In genomic sequences, functional motifs are often char- acterized by particular frequencies (rare or very fre- ...properties of structural words in ... Voir le document complet

19

Exploring the potential of a structural alphabet-based tool for mining multiple target conformations and target flexibility insight

Exploring the potential of a structural alphabet-based tool for mining multiple target conformations and target flexibility insight

... on structural variability ...in a sequence set. Multiple structural alignment tools, such as MUSTANG [ 13 ] and MulPBA programs [ 14 ], are proposed to compare globally 3D ...3D structure ... Voir le document complet

30

Structural deformation upon protein-protein interaction: A structural alphabet approach

Structural deformation upon protein-protein interaction: A structural alphabet approach

... The structural alphabet provides a simplified but detailed description of the protein ...some structural letters have very similar conformation, e.g., [a] and [A], ... Voir le document complet

19

Comparison of rapid protein structure determination approaches driven by experimental NMR data

Comparison of rapid protein structure determination approaches driven by experimental NMR data

... CS23D a n d C h e s h i r e h a v e b e e n ...experts using the same experimental data, these approaches were used to determine 3D structure of a benchmark of ... Voir le document complet

1

Protein symmetrization as a novel tool in structural biology

Protein symmetrization as a novel tool in structural biology

... ALIDATION OF PROTEIN SYMMETRISATION The cryoEM D6 restrained map of the best dodecameric chimera MagΔ5 was obtained at a resolution of 10 Å, as estimated by FSC ...Features of ... Voir le document complet

164

Structural Analysis of a Shear Wall and Frame Structure

Structural Analysis of a Shear Wall and Frame Structure

... Publisher’s version / Version de l'éditeur: Vous avez des questions? Nous pouvons vous aider. Pour communiquer directement avec un auteur, consultez la première page de la revue dans laquelle son article a été ... Voir le document complet

38

Automatic Classification of Protein Structure Using the Maximum Contact Map Overlap Metric

Automatic Classification of Protein Structure Using the Maximum Contact Map Overlap Metric

... efficiency of different types of dominance of our algorithm on domains from SCOPCath [ 22 ], a benchmark that consists of a consensus of the two major structural ... Voir le document complet

21

AlGaN/GaN MIS-HEMT gate structure improvement using Al2O3 deposited by PEALD

AlGaN/GaN MIS-HEMT gate structure improvement using Al2O3 deposited by PEALD

... elaboration of high-power and high frequency devices because of their excellent electrical properties such as a high breakdown voltage, a high electron saturation velocity and a high ... Voir le document complet

2

A comparison of structural and non-structural econometric models in the Toronto office market

A comparison of structural and non-structural econometric models in the Toronto office market

... support of the model structure of relating rents to vacancy rates was provided by Smith (1969) who researched a model of housing starts as a function of the price ... Voir le document complet

70

Rapid protein structure determination using experimental NMR data

Rapid protein structure determination using experimental NMR data

... Rapid protein structure determination using experimental NMR data.. Marius Wanko2[r] ... Voir le document complet

26

A reduced amino acid alphabet for understanding and designing protein adaptation to mutation.

A reduced amino acid alphabet for understanding and designing protein adaptation to mutation.

... influence of each type of amino acid at each position on structural and functional properties of ...selection of an amino acid type in a reliable set would be helpful to limit ... Voir le document complet

27

Protein structure determination using NMR backbone chemical shifts

Protein structure determination using NMR backbone chemical shifts

... University of Liege, Department of chemistry, Structural Biological Chemistry Unit , Liege, 4000, Belgium Introduction The knowledge of the tridimensional structure of a ... Voir le document complet

1

Improvement of mosquito identification by MALDI-TOF MS biotyping using protein signatures from two body parts

Improvement of mosquito identification by MALDI-TOF MS biotyping using protein signatures from two body parts

... the comparison of the average spectral profiles (main spectrum profile, MSP) obtained from the four spots for each specimen according to body part with MALDI-Biotyper ...strated using clustering ... Voir le document complet

13

Automatic classification of patients with Alzheimer's disease from structural MRI: a comparison of ten methods using the ADNI database

Automatic classification of patients with Alzheimer's disease from structural MRI: a comparison of ten methods using the ADNI database

... 1.1.1 a Voxel-Direct-D-gm 1.1.1 b Voxel-Direct-D-all 1.1.2 a Voxel-Direct-S-gm ...1.2.1 a Voxel-Direct_VOI-D-gm 1.2.1 b Voxel-Direct_VOI-D-all 1.2.2 a Voxel-Direct_VOI-S-gm ...1.3.1 a ... Voir le document complet

70

Role of Tau as a Microtubule-Associated Protein: Structural and Functional Aspects

Role of Tau as a Microtubule-Associated Protein: Structural and Functional Aspects

... out of four positions are phosphorylated. This data shows that a decreased capacity of Tau to assemble tubulin into MTs, such as observed for the CDK-phosphorylated Tau, cannot be explained solely by ... Voir le document complet

15

Structural and biochemical analyses of a surface array protein of Campylobacter fetus

Structural and biochemical analyses of a surface array protein of Campylobacter fetus

... Vous avez des questions? Nous pouvons vous aider. Pour communiquer directement avec un auteur, consultez la première page de la revue dans laquelle son article a été publié afin de trouver ses coordonnées. Si vous ... Voir le document complet

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