[PDF] Top 20 Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
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Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.
... Construction and content Species selection and tissue collection Fish used in this study were reared and handled in strict accordance with French and European policies ... Voir le document complet
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The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates.
... of the duplicated trout ...between the trout and medaka ...chromosomes in the trout genome (syntenic trout regions represented on either side by different colours according to ... Voir le document complet
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3D genome conformation and gene expression in fetal pig muscle at late gestation
... Before the appearance of the 3C-based methods, classical genome architecture studies were mainly performed by 3D Fluorescence In Situ Hybridization ...(DNA FISH), whole ... Voir le document complet
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csrB Gene Duplication Drives the Evolution of Redundant Regulatory Pathways Controlling Expression of the Major Toxic Secreted Metalloproteases in Vibrio tasmaniensis LGP32
... present in public databases (11 Vibrio species corresponding to 7 different clades of the Vibrio genus, 2 Aliivibrio species, and 1 ...from the NCBI genome database after ... Voir le document complet
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Universal trends of post-duplication evolution revealed by the genomes of 13 Paramecium species sharing an ancestral whole-genome duplication
... lowest expression level in the sister species, a bias that becomes stronger when looking at closely related species (Table ...retained in P. decaurelia, we find that only 3% of the ... Voir le document complet
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Synteny-guided resolution of gene trees clarifies the functional impact of whole genome duplications
... gar). Gene trees are labelled with duplication nodes in ...orthologs in the original gene trees from 600 Ensembl (blue/green, with yellow genes annotated as ...non-duplicated). ... Voir le document complet
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PAP IB, a new member of the Reg gene family: cloning, expression, structural properties, and evolution by gene duplication.
... of the post-genomic era (for reviews, see [42], [43] and ...Here, the structure of the newly described PAP IB protein was predicted through comparative ...both the 50% sequence identity ... Voir le document complet
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Efficient gene tree correction guided by genome evolution
... genes). The largest blocks are found in the terminal branches leading to Danio rerio and Cae- norhabditis ...shows the result for the full genomes of the full phylogeny of ... Voir le document complet
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Evolution after whole genome duplication: teleost microRNAs
... Whole genome duplication events (WGD) had profound impacts on metazoan evolution and are thought to have provided a substrate for species and phenotypic diversification by ... Voir le document complet
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Evolution of gene expression after whole-genome duplication: new insights from the spotted gar genome
... zebrafish and medaka singletons To identify singletons ...of the two TGD ohnologs was lost following TGD in zebrafish and/or medaka, see ...from the BioMart-derived list of intragenomic ... Voir le document complet
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RecQ helicases in the malaria parasite Plasmodium falciparum affect genome stability, gene expression patterns and DNA replication dynamics
... expressed in rings, trophozoites or schizonts do not differ in their content of tandem repeats and low-complexity ...shows the per- centage tandem-repeat (TR) content of all genes in ... Voir le document complet
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Integrating genome-wide genetic variations and monocyte expression data reveals trans-regulated gene modules in humans.
... from the transcriptome in humans is to characterize the biological basis of associations identified by genome-wide association ...cis expression quantitative trait loci (eQTLs) have ... Voir le document complet
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Behavior and gene expression in the brain of adult self-fertilizing mangrove rivulus fish (Kryptolebias marmoratus) after early life exposure to the neurotoxin β-N-methylamino-L-alanine (BMAA)
... diatoms and dinoflagellates, constitutes a serious environmental and health threat especially during acute blooms, which are becoming more ...implicated in several neurodegenerative diseases (ND) ... Voir le document complet
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Dynamic gene expression in fish muscle during recovery growth induced by a fasting-refeeding schedule
... test and only P < 0.05 were retained. Real-time PCR analysis The expression of 10 selected genes belonging to different functional classes was analysed by real-time ...instruction. The ... Voir le document complet
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Spectral analysis of gene expression profiles using gene networks
... reactions and interactions (KEGG [Kanehisa et ...2005] and others), the problem is how to integrate the detailed graph of gene interactions (and not just crude characteristics ... Voir le document complet
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Gene expression profiling in sinonasal adenocarcinoma.
... LGALS4 gene codes for the Galectin 4 protein ...involved in inflammation, apoptosis, cell adhesion and cell ...LGALS4 in particular has been detected in normal epithe- lial cells ... Voir le document complet
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Genome-Wide Characterization and Expression Profiling of the AUXIN RESPONSE FACTOR (ARF) Gene Family in Eucalyptus grandis
... ethylene in order to evaluate the consequences on the transcripts levels of the EgrARF genes in stems (organs enriched in ...xylem). The phenotypes of the ... Voir le document complet
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Genome-wide analysis reveals gene expression and metabolic network dynamics during embryo development in Arabidopsis
... continued in the pollen tube and after fertilization in the zygote ...3A-C). The GUS reporter construct for the At3g28780 gene was developed using a ... Voir le document complet
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A catalog of gene expression in the developing kidney.
... To the Editor: In a recent paper, Schwab et al [1] pro- vided an extensive description of gene expression dur- ing mouse nephrogenesis by coupling microarrays and robust target ... Voir le document complet
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TranscriptomeBrowser: a powerful and flexible toolbox to explore productively the transcriptional landscape of the Gene Expression Omnibus database
... resided in the construction of a database containing high quality transcriptional signatures obtained in an automated ...supervised and unsupervised classification algorithms can be ... Voir le document complet
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