[PDF] Top 20 CRAC: an integrated approach to the analysis of RNA-seq reads
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CRAC: an integrated approach to the analysis of RNA-seq reads
... analyzing RNA-seq. The combinatorial possibilities of aligning a read partly to two distinct regions on the same or different chromosomes [4] increase the likeliness ... Voir le document complet
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RNA-Seq Analysis of an Antisense Sequence Optimized for Exon Skipping in Duchenne Patients Reveals No Off-Target Effect
... Identification of U7-E53 Off-Target Events through RNA-Seq and In Silico Target Predictions We previously showed through biodistribution analysis of the vector in GRMD dogs that ... Voir le document complet
16
A dual transcript-discovery approach to improve the delimitation of gene features from RNA-seq data in the chicken model
... Improvement of the chicken genome is an ongoing project and a new version should be released within the next few ...reasonable to believe that continuing efforts will contribute ... Voir le document complet
9
Analysis of Single-Cell RNA-Seq Identifies Cell-Cell Communication Associated with Tumor Characteristics
... is the classification approach we use for determining cell ...common approach for identifying cell types is to cluster cells based on gene expression data and then manually assign a cell type ... Voir le document complet
17
dearseq: a variance component score test for RNA-Seq differential analysis that effectively controls the false discovery rate
... set analysis while correctly controlling the false discovery rate ...that the three most popular RNA-seq DEA methods may not guarantee control of the number of ... Voir le document complet
22
RNA-Seq Analysis of an Antisense Sequence Optimized for Exon Skipping in Duchenne Patients Reveals No Off-Target Effect.
... Identification of U7-E53 Off-Target Events through RNA-Seq and In Silico Target Predictions We previously showed through biodistribution analysis of the vector in GRMD dogs that ... Voir le document complet
15
CARNAC-LR : Clustering coefficient-based Acquisition of RNA Communities in Long Reads
... on the concept of clustering coefficient and we formalize our problem as finding communities such that a community is a connected component in the graph of similarity having a clustering ... Voir le document complet
4
A dual transcript-discovery approach to improve the delimitation of gene features from RNA-seq data in the chicken model
... Improvement of the chicken genome is an ongoing project and a new version should be released within the next few ...reasonable to believe that continuing efforts will contribute ... Voir le document complet
9
SimBA: A methodology and tools for evaluating the performance of RNA-Seq bioinformatic pipelines
... sets of reads [15, 16] as it is assumed that simulating NGS reflecting the biological complexity and technical biases associated with sequencing is ...Recently, an original approach, ... Voir le document complet
15
CEL-Seq2: sensitive highly-multiplexed single-cell RNA-Seq
... Expression analysis pipeline CEL-Seq reads were processed into an expression matrix using a multistep, parallel computational pipeline within the Galaxy framework ...run-time. ... Voir le document complet
8
Main Achievements of the Multidisciplinary SINAPS@ Research Project: Towards an Integrated Approach to Perform Seismic Safety Analysis of Nuclear Facilities
... Achievements of the Multidisciplinary SINAPS@ Research Project: Towards an Integrated Approach to Perform Seismic Safety Analysis of Nuclear Facilities ...provides ... Voir le document complet
54
CLIFinder: Identification of LINE-1 Chimeric Transcripts in RNA-seq data
... million reads) (Böhm et al., 2016). The original dataset GSM2122741 ...used to create: 1) Ov1.2, an implemented dataset similar to ...also the L1-MET LCT sequence (positive ... Voir le document complet
9
FB5P-seq: FACS-Based 5-Prime End Single-Cell RNA-seq for Integrative Analysis of Transcriptome and Antigen Receptor Repertoire in B and T Cells
... Subsets To illustrate the performance of our scRNA-seq protocol, we obtained non-malignant tonsil cell suspensions from two adult human donors, referred to as Tonsil 1 and Tonsil ... Voir le document complet
14
Characterization of FUS Mutations in Amyotrophic Lateral Sclerosis Using RNA-Seq
... Data Analysis RNA-Seq libraries were generated as described previously ...polyA+ RNA was reverse transcribed using Superscript III and converted to double-stranded ...prior to ... Voir le document complet
9
An RNA-seq based comparative approach reveals the transcriptome-wide interplay between 3′-to-5′ exoRNases and RNase Y
... Representation of RNA end (5 ′ or 3′) profiling obtained by RNA sequencing (performed in biological ...triplicates). The RNA ends that were more abundant in the wild type (WT) and ... Voir le document complet
13
Optimization of an RNA-Seq Differential Gene Expression Analysis Depending on Biological Replicate Number and Library Size
... France RNA-Seq is a widely used technology that allows an efficient genome-wide quantification of gene expressions for, for example, differential expression (DE) ...review of the ... Voir le document complet
19
An efficient RNA-seq-based segregation analysis identifies the sex chromosomes of Cannabis sativa
... Identifying the sex chromosome se- quence would improve early sexing and better management of this crop; however, the ...failed to do so. Moreover, as dioecy in the Cannabaceae family ... Voir le document complet
11
An Integrated FDD Approach for an Intensified HEX/Reactor
... While the other major contribution lies on that, we propose an integrated FDD approach that aims at detecting, isolating, and identifying faults that affected sensor, actuator, and process ... Voir le document complet
17
AN INTEGRATED APPROACH TO EVALUATE AND MONITOR THE CONSERVATION STATE OF CORALLIGENOUS BOTTOMS: THE INDEX-COR METHOD
... seems to meet the expectations of the stakeholders constraints: rapidity of data acquisition and easy-to-use for analysis, safety diving process and robustness of ... Voir le document complet
7
An integrated method to evaluate and monitor the conservation state of coralligenous habitats: The INDEX-COR approach
... directly to coralligenous habitats. Annex I of the Habitat Directive (HD, 92/43/EEC) takes into account a generic “Reefs” category in the list of habitats of community ...by ... Voir le document complet
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