Haut PDF Construction of a duck whole genome radiation hybrid panel : an aid for NGS whole genome assembly and a contribution to avian comparative maps
Construction of a duck whole genome radiation hybrid panel : an aid for NGS whole genome assembly and a contribution to avian comparative maps
... 2007 and its principle is sequencing by ligation. Like for the other two platforms, three main steps can be characterized: library preparation, cluster generation and ...also an in vitro ...
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Construction of a duck whole genome radiation hybrid panel : an aid for NGS whole genome assembly and a contribution to avian comparative maps
... 2007 and its principle is sequencing by ligation. Like for the other two platforms, three main steps can be characterized: library preparation, cluster generation and ...also an in vitro ...
312
RH mapping by sequencing: chromosome-scale assembly of the duck genome
... the duck genome has been sequenced thanks to the technological breakthrough provided by the emergence of Next Generation Sequencing ...made of thousands of scattered scaffolds. ...
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Evolution of gene expression after whole-genome duplication: new insights from the spotted gar genome
... Identification of zebrafish and medaka singletons To identify singletons ...genes for which one of the two TGD ohnologs was lost following TGD in zebrafish and/or medaka, see ...
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Deep-coverage whole genome sequences and blood lipids among 16,324 individuals
... definitions of statistical significance for WGS association analyses have not been harmonized in the ...convention of α = 5 × 10 −8 comes from the assumption of performing 1,000,000 inde- ...
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GATB: a software toolbox for genome assembly and analysis
... on a Bloom filter, Algorithms for Molecular Biology 2013, 8:22 ...assembling a 100 Mbp genome on a Credit Card Sized Computer, Poster at the JOBIM conference, 2013 Jul 1-4 (Toulouse) ...
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Porcine reproductive and respiratory syndrome virus whole-genome sequencing efficacy with field clinical samples using a poly(A)-tail viral genome purification method
... For Peer Review of high-throughput sequencing ...loads and PRRSV-specific reads for PoT samples. The synthesis of sequencing libraries is a critical phase that may fail at ...
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ShallowHRD: detection of homologous recombination deficiency from shallow whole genome sequencing
... shallowHRD, a software tool to evaluate tumor homologous recombination deficiency (HRD) based on whole genome sequencing (WGS) at low coverage (shallow WGS or sWGS; 1X ...implements a ...
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Draft Whole-Genome Shotgun Sequence of Streptomyces sp. Strain ETH9427
... The genome sequence of Streptomyces sp. strain ET9427 consists of a linear chro- mosome of 7,745,357 bp with long terminal inverted repeats of 201,878 bp and an ...
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Whole genome sequencing of elite rice cultivars as a comprehensive information resource for marker assisted selection
... 4 and Waxy-5 spans a cis-regulatory region of GBSSI and hence plays a role in the transcription efficiency of this ...improvement of cultivated plants for increased ...
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Addition of the microchromosome GGA25 to the chicken genome sequence assembly through radiation hybrid and genetic mapping
... Vignal A, Fillon V, Jacobbson L, Kerje S, Andersson L, Crooijmans RP, Aerts J, van der Poel JJ, Ellegren H, Caldwell RB, Hubbard SJ, Grafham DV, Kierzek AM, McLaren SR, Overton IM, Arakawa H, Beattie KJ, Bezzubov ...
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Whole genome-based population biology and epidemiological surveillance of Listeria monocytogenes
... is a multi-disciplinary open access archive for the deposit and dissemination of sci- entific research documents, whether they are pub- lished or ...teaching and research institutions ...
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Whole-genome sequence of a colombian Acinetobacter baumannii strain, a coproducer of OXA-72 and OXA-255-like carbapenemases
... Srinivasan A, Carey RB, Carmeli Y, Falagas ME, Giske CG, Harbarth S, Hindler JF, Kahlmeter G, Olsson-Liljequist B, Paterson DL, Rice LB, Stelling J, Struelens MJ, Vatopoulos A, Weber JT, Monnet ...
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Whole-genome sequencing of Aspergillus tubingensis G131 and overview of its secondary metabolism potential
... specific to A. tubingensis G131, a particular attention should be focused on to cluster 44 (Table ...According to AntiSMASH database, cluster 44 presents genes similarity of 80% ...
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A strategy to improve phasing of whole-genome sequenced individuals through integration of familial information from dense genotype panels.
... information to improve the scaffold A possibility to further improve phasing of WGS data and imputation accuracy could be to further enrich the scaf- fold with SNPs that are ...
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Whole genome shotgun phylogenomics resolves the pattern and timing of swallowtail butterfly evolution
... difficult to date the origin and diversification events of butterflies, due to the scarcity of their fossil record (Sohn et ...taxon and/or molecular sampling. However, a ...
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Whole-genome sequencing of Aspergillus tubingensis G131 and overview of its secondary metabolism potential
... insertion of several kb with no homology in the NCBI nr/nt data- ...functionalities to the SM clusters or could lead to production of puta- tive new secondary ...tations of these SM ...
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Whole-genome re-sequencing of non-model organisms: lessons from unmapped reads
... suite of tools (Altschul et al, ...reads and could help to recover some divergent genomic regions previously excluded from analyses and to discover putative ...
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A new whole genome culture-independent diagnostic test (WG-CIDT) for rapid detection of Salmonella in lettuce
... shortest of the three ...size of fragments reported for this kit was only 450 bp (manufacturers’ manual), but was optimal for the Ion Torrent sequencing platform wherein we used a ...
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Analysis of genetic variability and whole genome linkage of whole-brain, subcortical, and ependymal hyperintense white matter volume.
... Background and Purpose—The cerebral volume of T2-hyperintense white matter (HWM) is an important neuroimaging marker of cerebral ...subcortical and ependymal HWM are produced by 2 ...
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