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Comparing Protein 3D Structures Using A_purva
... Comparing Protein 3D Structures Using A purva 3 1 Introduction It is commonly accepted in structural biology that the bigger the similarity between proteins, the higher the probability ... Voir le document complet
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Exploring protein architecture using 3d shape-based signatures
... for protein structure retrieval, mainly using structure alignment ...aligned structures: thus loosing semantic information about the interrelationship of the substructures on the ... Voir le document complet
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Structural Alphabet: From a Local Point of View to a Global Description of Protein 3D Structures
... extended structures have been intensively studied too. Thus, Venkatachalam, using a theoretical approach close to Ramachandran method [39], determined small local folds characterized by the reversing of the ... Voir le document complet
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A new prediction strategy for long local protein structures using an original description.
... named Protein Blocks (PBs), with the aim of not only characterizing the local structures observed among the largest set of known proteins 3D structures but also at identifying optimal ... Voir le document complet
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Large-scale prediction of protein-protein interactions from structures
... of protein-protein interactions is an important step toward the elucidation of protein functions and the understanding of the molecular mechanisms inside the ...solved 3D protein ... Voir le document complet
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Automatic Classification of Protein Structures Using the Maximum Contact Map Overlap Metric
... for comparing two protein structures based on their contact map ...classify protein structures accurately and efficiently in ...a protein structure according to the k-nearest ... Voir le document complet
21
Modeling protein evolution using secondary structures
... 1.3.1.2 Protein evolution in homology modeling An understanding of the mechanisms and pressures that caused a protein to evolve into a different protein will improve homology modeling, also known as ... Voir le document complet
82
PGR: A Novel Graph Repository of Protein 3D-Structures
... more protein 3D-structures due to techniques such as X-ray crystallography, increasing efforts have been devoted to directly deal with ...of protein structures is to look for a ... Voir le document complet
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2013 — Reconstruction 3D des structures adjacentes de l'articulation de la hanche par une segmentation multi-structures à l'aide des maillages surfaciques triangulaires
... en 3D de cette structure à partir des images TDM est un atout pour les chirurgiens orthopédistes dans les cas de remplacement de celle-ci chez les patients souffrant de maladies dégénératives tells que la ...en ... Voir le document complet
164
Rescoring ensembles of protein-protein docking poses using consensus approaches
... 1EAW, 250 for 1XQS and 606 for 1E6E. These examples highlight the usefulness of consensus-based rescoring to rescue poses with poor initial ranks. Figure 4. Examples of successful combination of ZDOCK clusters and ... Voir le document complet
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Indexing and Retrieval of Multiple 3D Protein Structure Representations for the Protein Data Bank
... NRC Publications Archive Archives des publications du CNRC Access and use of this website and the material on it are subject to the Terms and Conditions set forth at Indexing and Retrieval of Multiple 3D ... Voir le document complet
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Protein Supramolecular Structures: From Self-Assembly to Nanovaccine Design
... of using self-assembling peptides and proteins to conceive supramolecular assemblies for nanovaccine design has increased considerably [? ...in protein self-assembly, we present the strategies to design and ... Voir le document complet
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Comparing two clusterings using matchings between clusters of clusters
... 8 Conclusion This paper contributes to a new tier of algorithms to compare two clusterings, based on the identification of groups of clusters matching one-another. This problem had only been considered very recently ... Voir le document complet
52
High Resolution Crystal Structures Leverage Protein Binding Affinity Predictions
... Outlook. Estimating binding affinities is a central endeavor to understand protein - protein interactions. Strikingly, the predictive models and variables presented here yield a prediction accuracy of 2.8 ... Voir le document complet
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Comparing Representations for Audio Synthesis Using Generative Adversarial Networks
... suits a specific task without any prior assumptions. In the following, we refer to this representation as waveform. • The Short-Time Fourier Transform (STFT) decom- poses a signal as a weighted sum of complex sinusoidal ... Voir le document complet
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A bioinformatic web server to cut protein structures in terms of Protein Units.
... of protein cutting Figures 4 and 5 show the cutting of dialkylglycine decarboxylase through Protein Peeling approach (PDB code ...the protein into two much misbalanced PUs (1-26 and ... Voir le document complet
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Comparing the Homogeneity of Income Distributions using Polarization Indices
... distributions using Intersection Union tests and bootstrapped ...by comparing pairs of distributions of eleven countries drawn from the Luxembourg Income Study ... Voir le document complet
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Comparing Lustre Performance using Myricom 10G Dual Protocol NICs
... We then reran the tests using the switch. The switch does not make much difference for metadata (less than a 2% loss), but it lowers read performance by 12% from 617 to 544 MB/s and it lowers write performance by ... Voir le document complet
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Reconciling NMR Structures of the HIV-1 Nucleocapsid Protein NCp7 Using Extensive Polarizable Force Field Free-Energy Simulations
... (9) Schmalzbauer, E.; Strack, B.; Dannull, J.; Guehmann, S.; Moelling, K. Mutations of basic amino acids of NCp7 of human immunodeficiency virus type 1 affect RNA binding in vitro. J. Virol. 1996, 70, 771–777. (10) ... Voir le document complet
25
Comparing Semantic Relatedness between Word Pairs in Portuguese Using Wikipedia
... In order to evaluate similarity measures in other natural languages, a trans- lation of some datasets has been made. Joubarne and Inkpen in [9] translated the RG65 dataset into French in order to measure the semantic ... Voir le document complet
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