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An analysis of representations for protein structure prediction

An analysis of representations for protein structure prediction

... where i represents the type of secondary structure; TP is the number of true positives (correct predictions of that secondary structure); TN is the number of true negat[r] ... Voir le document complet

279

Coherent two-dimensional infrared spectroscopy: Quantitative analysis of protein secondary structure in solution

Coherent two-dimensional infrared spectroscopy: Quantitative analysis of protein secondary structure in solution

... spectra of idealized structures published previously.[37] c. Secondary Structure Prediction The SVD method is validated by removing each protein from the initial set, creating an SVD ... Voir le document complet

17

Discrete analysis of camelid variable domains: sequences, structures, and in-silico structure prediction

Discrete analysis of camelid variable domains: sequences, structures, and in-silico structure prediction

... conformational analysis Secondary structures were assigned with the most widely used algorithm, namely DSSP (CMBI version 2000) with default parameters (Kabsch et Sander ...83). Protein Blocks (PBs) were ... Voir le document complet

29

Development of chemogenomic approaches for prediction of protein - ligand interactions

Development of chemogenomic approaches for prediction of protein - ligand interactions

... Description of the chemogenomic space possible only for proteins belonging to the same family, as already ...basis of protein sequences is limited to proteins belonging to the same ...SVM ... Voir le document complet

160

Large-scale prediction of protein-protein interactions from structures

Large-scale prediction of protein-protein interactions from structures

... point of view, we face two issues to implement this ...manipulate protein 3D structures in the context of a machine learning ...algorithm. For this we borrow an idea from [15], who ... Voir le document complet

10

An 1d-beam approach for both stress analysis and fatigue life prediction of bonded joints

An 1d-beam approach for both stress analysis and fatigue life prediction of bonded joints

... MODEL FOR BONDED JOINT STRESS ANALYSIS Overview of the approach [4] The presented approach allows for the resolution of the set of differential ...matrices of each element ... Voir le document complet

19

Analysis of an optimal hidden Markov model for secondary structure prediction

Analysis of an optimal hidden Markov model for secondary structure prediction

... secondary structure prediction using SVM [6-8]. A number of attempts using Hidden Markov Models (HMM) have also been ...particularity of these models is their ability to allow an ... Voir le document complet

21

Species specific amino acid sequence-protein local structure relationships: An analysis in the light of a structural alphabet.: species‟ sequence - structure relationship

Species specific amino acid sequence-protein local structure relationships: An analysis in the light of a structural alphabet.: species‟ sequence - structure relationship

... local protein structure libraries that are able to give a complete approximation of protein structures, without any a priori knowledge of secondary structure assignments, have ... Voir le document complet

36

An assessment of body force representations for compressor stall simulation

An assessment of body force representations for compressor stall simulation

... For the changes to the radial distribution of forces represented by case A, B and C, the stalling flow coefficient versus stalling pressure rise coefficient trend is ap[r] ... Voir le document complet

72

An Error Estimator for Separated Representations of Highly Multidimensional Models

An Error Estimator for Separated Representations of Highly Multidimensional Models

... angles. Thus, we can de fine a conductivity varying in the interval [0,1], where the highest values were depicted in red in Fig. 6 and the regions with lowest conductivity were represented in blue. Fig. 7 represents the ... Voir le document complet

10

Protein secondary structure assignment revisited: a detailed analysis of different assignment methods.

Protein secondary structure assignment revisited: a detailed analysis of different assignment methods.

... one of the most widely- used program for secondary structure ...detection of hydrogen- bonds defined by an electrostatic ...Secondary structure elements are then assigned ... Voir le document complet

18

Local backbone structure prediction of proteins.

Local backbone structure prediction of proteins.

... define an entropy-based index called Neq (for equivalent Number of Protein Blocks), close to the one proposed in PSIPRED ...PB prediction success in each ...performed prediction ... Voir le document complet

11

Species specific amino acid sequence - Protein local structure relationships: An analysis in the light of a structural alphabet

Species specific amino acid sequence - Protein local structure relationships: An analysis in the light of a structural alphabet

... view of AAS-PS (NR, see Supplementary material ...diversity of blood stage antigens is one of the key challenges for vaccine development against ...proposed for antigen discovery is ... Voir le document complet

37

Comparative Analysis of Protein -Protein Interface Methods

Comparative Analysis of Protein -Protein Interface Methods

... Comparative Analysis of Protein - Protein Interface Methods A.G. de Brevern 1 and J. Esque 2 1 Laboratoire DSIMB, INSERM, U 1134, Univ Paris Diderot, Univ. Sorbonne Paris Cité, INTS, ... Voir le document complet

2

Structure-function relationships of human cholesteryl ester transfer protein: analysis using monoclonal antibodies

Structure-function relationships of human cholesteryl ester transfer protein: analysis using monoclonal antibodies

... L’accès à ce site Web et l’utilisation de son contenu sont assujettis aux conditions présentées dans le site LISEZ CES CONDITIONS ATTENTIVEMENT AVANT D’UTILISER CE SITE WEB. Journal of Lipid Research, 37, pp. ... Voir le document complet

14

Comparison of Skin Model representations and Tooth Contact Analysis techniques for Gear tolerance analysis

Comparison of Skin Model representations and Tooth Contact Analysis techniques for Gear tolerance analysis

... set of offset boundaries form a tolerance zone which bounds the entire part ), • by using the variational geometry approach or by using other variational models (Variational models or parameterization of ... Voir le document complet

30

A comparative analysis of design rationale representations

A comparative analysis of design rationale representations

... quite limited expressiveness, as we have discussed above: We cannot directly respond to an argument; we cannot represent or argue about the evaluation criteria used. We cannot indicate t[r] ... Voir le document complet

68

Algorithm engineering for optimal alignment of protein structure distance matrices

Algorithm engineering for optimal alignment of protein structure distance matrices

... cases of sim- ilar ...solutions for all ...pairs of inter-residue distances in order to obtain good ...[24], for example, can uniquely reconstruct a protein’s 3D structure from a small ... Voir le document complet

15

Prediction of miRNA-disease Associations using an Evolutionary Tuned Latent Semantic Analysis

Prediction of miRNA-disease Associations using an Evolutionary Tuned Latent Semantic Analysis

... evolution for each experiment using PGPABDE and PBDE ...line for showing EA’s ...number of evaluations is preferred. It is also preferred for comparing both ...population of PBDE ... Voir le document complet

14

Data-driven kernel representations for sampling with an unknown block dependence structure under correlation constraints

Data-driven kernel representations for sampling with an unknown block dependence structure under correlation constraints

... shapes of N = 975 ballast grains have been measured very pre isely . As an illustration, Figure 7 shows the s ans of three ballast ...measurements an be onsidered as independent realizations ... Voir le document complet

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