Transposable element
Parental transposable element loads influence their dynamics in young <em>Nicotiana</em> hybrids and allotetraploids
... Discussion Transposable element evolutionary dynamics in allopolyploids reflects their dynamics in diploids Phylogenetic networks reconstructed with SSAP data for six TEs, whether analysed independently or ...
15
Parallel action of AtDRB2 and RdDM in the control of transposable element expression.
... Plant DRBs are strictly composed of two DSRMs with no other functional domain. Arabidopsis possesses five known DRB (DRB1 to 5) [29], each containing two N- terminal DSRMs. DRB1 and DRB4 have been well char- acterized ...
14
Stress response, behavior, and development are shaped by transposable element-induced mutations in Drosophila.
... Transposable element frequency estimation To estimate TE population frequencies, we used T-lex2, a computational tool that works both with individual genomes and with pooled ...
34
High-Throughput Sequencing of Transposable Element Insertions Suggests Adaptive Evolution of the Invasive Asian Tiger Mosquito Towards Temperate Environments
... of transposable element insertions led to the discovery of more than 120,000 polymorphic loci, which, in their great majority, revealed a virtual absence of structure between the biogeo- graphic ...
15
Differential retention of transposable element-derived sequences in outcrossing Arabidopsis genomes
... protein coding genes, possibly as a result of differen- tial removal of SINE copies in gene-poor regions. TE deletion: a cure worse than the disease? Our results suggest that several factors can affect the long-term ...
17
Spatio-temporal requirements for transposable element piRNA-mediated silencing during Drosophila oogenesis
... ABSTRACT During Drosophila oogenesis, transposable element (TE) repression involves the Piwi-interacting RNA (piRNA) pathway which ensures genome integrity for the next generation. We developed a transgenic ...
14
Megabase level sequencing reveals contrasted organization and evolution patterns of the wheat gene and transposable element spaces
... 3222 transposable elements were identified, including 800 new ...different transposable element families led to contrasted sequence compo- sitions between the proximal and distal ...
39
PP7L is essential for MAIL1‐mediated transposable element silencing and primary root growth
... in homologous recombination-mediated DNA repair Figure 3. Loss of PP7L function lead to release of transposable element (TE) silencing. (a) RT-qPCR analysis on RNA isolated from 7 days after germination ...
15
Measuring and interpreting transposable element expression
... initial mapping step may become avoidable in the future 99 . An alternative strategy was developed to identify and measure the expression of a polymorphic L1HS element responsible for a driver mutation in colon ...
43
Considering transposable element diversification in de novo annotation approaches
... Traditionally, the quality of de novo consensus sequences — the extent to which they correspond to full TE reference sequences rather than truncated versions — is not assessed. Validation is instead indirect: researchers ...
16
Transposable element-assisted evolution and adaptation to host plant within the Leptosphaeria maculans-Leptosphaeria biglobosa species complex of fungal pathogens
... Annotation of transposable elements Transposable Elements were identified and annotated using the REPET pipeline [86]. The TEdenovo pipeline de- tects repeat copies, clusters them into families and gener- ...
28
Recurrent insertion and duplication generate networks of transposable element sequences in the Drosophila melanogaster genome.
... Analysis of the first draft of the D. melanogaster genome sequence offered the first glimpse of the contiguous molecu- lar organization of β-heterochromatin, and suggested that "there is no clear boundary between ...
22
Transposable elements and human cancer: A causal relationship?
... of transposable element ...composite element containing from 5’ to 3’ a hexamer (CCCTCT)n repeat, an Alu-homologous region of two antisense Alu fragments including other sequence of unknown origin, a ...
38
A snapshot of histone modifications within transposable elements in Drosophila wild type strains.
... histone and expression profile, and is the only profile common to both species. We have confirmed the recent findings that the pattern of histone modifications associated with Drosophila TEs is more complex than in ...
8
Organization and evolution of transposable elements along the bread wheat chromosome 3B
... Triticeae transposable element sequences A library of TE sequences dedicated to similarity search- based annotation of TEs in the wheat genome was built as described in Choulet et ...
16
Reply : A universal classification of eukaryotic transposable elements implemented in Repbase
... the transposable element community on transposable element taxonomy, while add- ing features (including a full hierarchical nomenclature) and application rules that will benefit annotators and ...
1
Transposable elements are a major cause of somatic polymorphism in Vitis vinifera L.
... based primers and revealed polymorphism among five Pinot clones. But Verrie`s et al., [23] using Vine-1 based primers, failed to reveal any variation among six Pinot clones. A wider choice of mobile elements which can ...
11
Comment évaluer la création vidéoludique en animation socioculturelle et médiation culturelle ? De l'expérience LiègeCraft à une matrice transposable
... De l’expérience LiègeCraft à une matrice transposable De l’expérience LiègeCraft à une matrice transposable Alexis Messina | Université de Liège | alexis.messina@uliege.be Bruno Dupont | Haute École de la ...
11
Element 92 – Uranium
... any element of the Periodic Table could be said to be the centre of controversies and unrest over its use and over the consequences of its use, uranium would be the obvious ...
15
Impact of transposable elements on genome size variation between two closely related crustacean species
... Impact of transposable elements on genome size variation between two closely related crustacean species1. Thomas Becking, Clement Gilbert, Richard Cordaux1[r] ...
22