SNP data
Inferring sex-specific demographic history from SNP data
... sequence data now enables us to take advantage of tens to hundreds of thousands of independent loci from autosomes and the X ...count data for each branch of a rooted tree topology that summarizes the ...
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FLPCA: A Fused Lasso PCA-based approach to identify influential markers in differentiated populations from dense SNP data
... • Hoefling, H.(2010) A path algorithm for the fused lasso signal approximator. Journal of Computational and Graphical Statistics 19(4):984-1006. • Lalo¨ e, D. and Gautier, M. (2011). On the genetic interpretation of ...
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Inferring sex-specific demographic history from SNP data
... sequence data now enables us to take advantage of tens to hundreds of thousands of independent loci from autosomes and the X ...count data for each branch of a rooted tree topology that summarizes the ...
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SNP-HLA Reference Consortium : HLA and SNP data sharing for promoting HLA centric analyses in genomics
... 1 Centre de Recherche en Transplantation et Immunologie UMR 1064, INSERM, Université de Nantes, Nantes, France; 2 Institut de Transplantation Urologie Néphrologie (ITUN), CHU Nantes, Nantes, France; 3 Ecole Centrale de ...
2
On the genetic interpretation of Between-Group PCA on SNP data
... the data sets, thereby facilitating data visualisation and storage requirements [22], in particular via some extensions such as sparse PCA, Lasso and Elastic Net [23, ...Panel data set ...
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Insights into the Genetic History of French Cattle from Dense SNP Data on 47 Worldwide Breeds
... the data set consisted of new genotypes for 296 individuals representing 14 French cattle breeds which were combined to those available in three previous published studies: i) 19 populations sampled by the Bovine ...
12
Significant variation between SNP-based HLA imputations in diverse populations: the last mile is the hardest
... SNPs, SNP haplotypes and other genetic markers are in strong LD with specific HLA alleles 15, 16 has motivated the development of methods for the imputation of HLA genotypes from SNP genotypes, with the ...
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SNP Detection from De Novo Transcriptome Sequencing in the Bivalve Macoma balthica: Marker Development for Evolutionary Studies
... Hybrid zones are noteworthy systems for the study of environmental adaptation to fast-changing environments, as they constitute reservoirs of polymorphism and are key to the maintenance of biodiversity. They can move in ...
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Development of nuclear and plastid SNP markers for genetic studies of Dipteryx tree species in Amazonia
... rata (Aubl.) Willd and D. charapilla J.F. Macbr. Ducke are classified as vulnerable in the IUCN Red List of Threatened Species (IUCN 2018 ). Nuclear microsatellites (nSSRs) have been developed to study gene flow of D. ...
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La construction d’une carte génétique consensus à haute densité chez le soja basée sur des marqueurs SNP dérivés du génotypage par séquençage (GBS)
... • GBS La méthode de génotypage par séquençage (GBS) a été développée comme étant une méthode simple mais robuste pour la réduction de complexité du génome (Poland et al., 2012), laquelle est particulièrement utile chez ...
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Highly predictive SNP markers for efficient selection of the wheat leaf rust resistance gene Lr16
... Six SNP markers (BS00108724_kwm461, 2BS-5192454_ kwm677, 2BS-5203447_kwm742, 2BS-5194460_kwm747, 2BS-5175914_kwm847, and 2BS-5175914_kwm849) pre- sented in this work were completely predictive of Lr16 in a diverse ...
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Design and synthesis of the superionic conductor Na[subscript 10]SnP[subscript 2]S[subscript 12]
... materials, chemical intuition alone cannot reliably determine which chemical modifications will result in experimentally realizable structures, for example, the high conductivity lithium garnets 19 have no direct sodium ...
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High efficiency and informativeness of a set of SNP molecular markers in Tunisian local grapevines discrimination
... Although SNP markers are bi-allelic, and therefore not as polymorphic as microsatellites, the high number of loci that can be multiplexed and the possibilities of automation as well as their highly repeatable ...
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Genetic characterization of cupped oyster resources in Europe using informative single nucleotide polymorphism (SNP) panels
... small SNP panels to characterize individual ancestry in oysters is the detection of ...our SNP panels are efficient to detect first generation hybrids and admixed genotypes with balanced ancestry ...
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Development of nuclear SNP markers for the timber tracking of the African tree species Sapelli, Entandrophragma cylindricum
... for SNP marker development with restriction associated DNA sequencing (RADseq; Table 1 ...and SNP detection. RADseq procedure and SNP detection protocols were the same as described in (Blanc-Jolivet ...
3
Allele diversity for abiotic stress responsive candidate genes in chickpea reference set using gene based SNP markers
... a SNP within a regulatory region, account- ing for the loss of function of a seed shattering gene has been already shown in rice, which indicates that single sequence vari- ants can cause major effects on the ...
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Rob Kitchin, The Data Revolution: Big Data, Open Data, Data Infrastructures and Their Consequences
... big data par les gouvernements et le secteur privé, Rob Kitchin constate qu'il oblitère les conséquences potentiellement négatives de cette adoption sur les libertés civiles, la sécurité des données, le social ...
5
Data security and data processing
... Recovery is a function of detection. If we can identify all interfaces, and are able to detect all errors at the interfaces, then we can produce a recovery mechanism [r] ...
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Association Mapping between Candidate Gene SNP and Production and Oil Quality Traits in Interspecific Oil Palm Hybrids
... Phenotypic Data Analysis The analyses of production traits revealed larger differences between Coarí × La Mé genotypes and the other four origins where Taisha was ...
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A new SNP-based vision of the genetics of sex determination in European sea bass (Dicentrarchus labrax)
... Vandeputte et al. [17], heritability was estimated using data on 5893 animals from 253 full-sib families. The F 2 sib regression analysis detected three genome- wide significant sex-determining QTL on linkage ...
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