Single nucleotide polymorphism (SNP)
A Single Nucleotide Polymorphism in cBIM Is Associated with a Slower Achievement of Major Molecular Response in Chronic Myeloid Leukaemia Treated with Imatinib
... Experimental Design: BIM coding sequence analysis was performed in 72 imatinib-treated CML patients from a French population of our centre and in 29 healthy controls (reference population) as a case-control study. ...
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Alteration of processing induced by a single nucleotide polymorphism in pri-miR-126
... the single nucleotide polymorphism (SNP) at the twenty- fourth nucleotide (+24) of the mature miR-126 in the genome of RS4;11 cells, derived from a MLL-AF4 ALL ...
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Characterization of polyploid wheat genomic diversity using a high-density 90 000 single nucleotide polymorphism array
... High-density single nucleotide polymorphism (SNP) data are widely used to detect marker –trait associations in quantitative trait locus (QTL) mapping experiments and genome-wide associ- ation studies ...
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Discovery and mapping of a new expressed sequence tag-single nucleotide polymorphism and simple sequence repeat panel for large-scale genetic studies and breeding of Theobroma cacao L.
... length polymorphism (RFLP), microsa- tellites or simple sequence repeats (SSRs), random amplified polymorphic DNA, amplified fragment length polymorphism and ...and single-nucleotide ...
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Comparing single-nucleotide polymorphism marker-based and microsatellite marker-based linkage analyses.
... and single-nucleotide polymorphism (SNP) markers (Affymetrix and Illumina) in the Collaborative Study on the Genetics of Alcoholism (COGA) dataset provided to participants at the Genetic Analysis ...
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Unravelling population structure and recent colonization history of an elusive carnivore, the Eurasian otter (Lutra lutra) in western France using microsatellites and Single-Nucleotide-Polymorphism (SNP) markers.
... Unravelling population structure and recent colonization history of an elusive carnivore, the Eurasian otter (Lutra lutra) in western France using microsatellites and Single-Nucleotide-Polymorphism ...
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Development of a cost-effective single nucleotide polymorphism genotyping array for management of greater yam germplasm collections
... European Union and Guadeloupe Region Abstract Using genome‐wide single nucleotide polymorphism (SNP) discovery in greater yam (Discorea alata L.), 4,593 good quality SNPs were identified in 40 ...
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Genomic expression and single-nucleotide polymorphism profiling discriminates chromophobe renal cell carcinoma and oncocytoma.
... resolution single-nucleotide polymorphism (SNP) profiling, proceeding to identify a useful and valid molecular predictor, as well as identify- ing novel immunohistochemical markers for each ...
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Single nucleotide polymorphism in the promoter of the steroidogenic factor 1 (SF-1) gene after gestational exposure to Bisphenol A.
... So far, we have not identified any region with differential methylation of the SF-1 promoter in female placenta exposed to BPA compared to control. However, the sequencing of this region highlights a single ...
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A multiplex single nucleotide polymorphism typing assay for detecting mutations that result in decreased fluoroquinolone susceptibility in Salmonella enterica serovars Typhi and Paratyphi A
... unambiguous single nucleotide polymorphism calls on extracted DNA from 292 iso- lates of Salmonella Typhi (Nal R ¼ 223 and Nal S ¼ 69) and 106 isolates of Salmonella Paratyphi A (Nal R ¼ 24 and Nal S ...
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Development of a genetic traceability test in pig based on single nucleotide polymorphism detection
... on single nucleotide polymorphism, two choices presented to us: working with SNPs already present in GenBank or searching new SNPs in the major crossbred pig population in ...
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Dealing with paralogy in RADseq data: in silico detection and single nucleotide polymorphism validation in Robinia pseudoacacia L.
... All our analyses demonstrated a strong impact of paralogy on esti- mated levels of polymorphism (number of SNPs, number of multiallelic SNPs, theta, etc.), in line with but exceeding that of the depth of cover- ...
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The tumoral A genotype of the MGMT rs34180180 single-nucleotide polymorphism in aggressive gliomas is associated with shorter patients’ survival
... Correspondence may also be addressed to Anne Fogli. Tel: +33 4 73 17 81 78; Fax: +33 4 73 27 61 32; Email: anne.fogli@udamail.fr Abstract Malignant gliomas are the most common primary brain tumors. Grade III and IV ...
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Single-nucleotide polymorphism identification and genotyping in Camelina sativa
... robust single copy SNP loci assayed through standard procedures, which are dependent upon specific hybridization to short oligo- nucleotide sequences, thus confounded by the pre- sence of duplicated ...
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Rs488087 single nucleotide polymorphism as predictive risk factor for pancreatic cancers
... Figure 1: Location of the SNP rs488087 within the cDNA sequence of BSDL. Top of the figure shows the 11 exons of the gene with 16 repeated sequences. In red are the three amino acids (Ser-Asp-His) involved in the ...
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Genomic prediction in French Charolais beef cattle using high-density single nucleotide polymorphism markers1
... A large training population of about 2,000 animals is now available in French Charolais cattle. Therefore, information from this breed was used to determine the adequate methodology f[r] ...
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Genetic characterization of cupped oyster resources in Europe using informative single nucleotide polymorphism (SNP) panels
... informative single-nucleotide polymorphisms (SNPs) allowed characterizing current ancestry patterns and temporal changes in admixture among two genetically distinct lineages of the invasive marine crab ...
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Single nucleotide polymorphisms in the promoter regions of Foxp3 and ICOSLG genes are associated with Alopecia areata.
... cific single nucleotide polymorphism (SNP) in the pro- moter regions of FOXP3 (rs2294020) and ICOSLG (rs378299) genes could be associated with AA develop- ...
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Single nucleotide differences (SNDs) in the dbSNP database may lead to errors in genotyping and haplotyping studies.
... of single-nucleotide polymorphism (SNP) databases (such as NCBI dbSNP) has facilitated scientific research in many ...(Single Nucleotide Differences) in humans, that may contaminate the ...
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Possible Involvement of the CACNA1E Gene in Migraine: A Search for Single Nucleotide Polymorphism in Different Clinical Phenotypes
... This contingency table is divided into: controls (n 5 102); MO, Migraine without aura; MTA, Migraine with typical aura; MAplus, migraine with complex neurological auras (Brainstem aura, [r] ...
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