16S rRNA
Phylogenetic relationships among the cyanobacteria based on 16S rRNA sequences
... genotypic relationships of these strains more in detail. The three strains with divisions in more than one plane, Fischerella PCC 7414, Chlorogloeopsis fritschii PCC 6718 and Chlorogloeopsis HTF (‘Mastigocladus HTF’) PCC ...
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Occurence of ArmA and RmtB Aminoglycoside Resistance 16S rRNA Methylases in Extended-Spectrum β-Lactamases Producing Escherichia coli in Algerian Hospitals
... In Algeria, the first CTX-M enzymes have been reported in 2005 in clinical strains of Salmonella enterica from Constantine, East of Algeria ( Naas et al., 2005 ). Since then, several surveys in the north of Algeria have ...
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Deep sequencing of 16S rRNA gene to efficiently assess bacterial richness and the rare biosphere in soils
... of 16S rRNA gene to efficiently assess bacterial richness and the rare biosphere in ...context, 16S rRNA gene is widely used to study microbial community taxonomic diversity, as it can be ...
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IncFII k plasmid harbouring an amplification of 16S rRNA methyltransferase-encoding gene rmtH associated with mobile element IS CR2
... the 16S rRNA ...the 16S methyltransferase rmtH gene recently ...the 16S RMTase RmtH, ESBL SHV-12 and carbapenemase OXA-48, which has been observed in ...
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Bacterial populations concomitant with Sclerotium rolfsii sclerotia in flooded soil, as estimated by 16S rRNA gene, PCR-DGGE and sequence analyses
... viability and thus promote increases in crop yield. Some methods have been studied: for instance, flooding of sclerotium-infested fields for one month decreased not only disease incidence but also sclerotial ...
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Development of a universal microarray based on the ligation detection reaction and 16S rRNA gene polymorphism to target diversity of cyanobacteria
... Received 6 April 2004/Accepted 3 August 2004 The cyanobacteria are photosynthetic prokaryotes of significant ecological and biotechnological interest, since they strongly contribute to primary production and are a rich ...
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Conserved Bacterial RNase YbeY Plays Key Roles in 70S Ribosome Quality Control and 16S rRNA Maturation
... both rRNA matu- ration and RNA degradation ( Bollenbach et ...matured 16S rRNA 3 0 termini in the DybeY Drnr and DybeY Dpnp mutants ( Davies et ...
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Characterization of bacteria in biopsies of colon and stools by high throughput sequencing of the V2 region of bacterial 16S rRNA gene in human.
... PCR amplification and sequencing of the V2 region of bacterial 16S rRNA The V2 region of 16S rRNA was amplified using a primer set reported by Hamady et al. [14]. For 454 Standard chemistry, ...
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Dynamics of the Pacific oyster pathobiota during mortality episodes in Europe assessed by 16S rRNA gene profiling and a new target enrichment next-generation sequencing strategy
... as 16S rRNA pro filing or shotgun metagenomics widely employed in microbiome studies would also not be of great help to this purpose as they lack phylogenetic resolution ...(e.g. 16S rRNA ...
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The use of 16S rRNA gene metagenetic monitoring of refrigerated food products for understanding the kinetics of microbial subpopulations at different storage temperatures: the example of white pudding
... Available online xxxx In order to control food losses and wastage, monitoring the microbial diversity of food products, during process- ing and storage is important, as studies have highlighted the metabolic activities ...
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PhytoREF: a reference database of the plastidial 16S rRNA gene of photosynthetic eukaryotes with curated taxonomy
... plastidial 16S rRNA gene of photosynthetic ...plastidial 16S rRNA gene including sequences from all major lineages of photosynthetic eukaryotes, comprising terrestrial, freshwater and marine ...
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PhylOPDb: a 16S rRNA oligonucleotide probe database for prokaryotic identification
... Despite its comprehensiveness, the probeset described in PhylOPDb, however, suffers from a lack of homogeneity that is the third important criterion of a probe design after sensitivity and specificity. Nevertheless, it ...
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Absolute quantitation of microbes using 16S rRNA gene metabarcoding: A rapid normalization of relative abundances by quantitative PCR targeting a 16S rRNA gene spike‐in standard
... the 16S rRNA gene is commonly used to characterize microbial communities, by estimating the relative abundance of ...the 16S rRNA gene per gram of any en- vironmental sample using a synthetic ...
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Careful use of 16S rRNA gene sequence similarity values for the identification of Mycobacterium species.
... of 16S rRNA nucleotide sequence similarity for the classification of new Mycobacterium isolates at the species level, we systematically studied the pairwise identity values of this gene for 131 Mycobacterium ...
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Molecular analysis and development of 16S rRNA oligonucleotide probes to characterize a diclofopmethyl-degrading biofilm consortium
... the 16S rDNA alignment of the nine ...the 16S rDNA sequences of the nine isolates, was performed using the Amplify software (Bill Engels, copy- ...the 16S rRNA in the domain Bacteria, was ...
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Next-generation sequencing of 16S ribosomal RNA gene amplicons
... the 16S rRNA gene to generate a community profile. Traditionally, 16S rRNA gene amplicon sequencing was carried out using labor intensive techniques that included cloning in ...of 16S ...
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Short communication: Evaluation of the microbiota of kefir samples using metagenetic analysis targeting the 16S and 26S ribosomal DNA fragments
... metagenetics, 16S rRNA sequencing, 26S rRNA sequencing Short Communication Originally from the Caucasus Mountains (Otles and Cagindi, 2003), kefir is widely consumed in Eastern Europe but now ...
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Stem-Loop RNA Hairpins in Giant Viruses: Invading rRNA-Like Repeats and a Template Free RNA
... 23S rRNA, as observed for most rod-shaped viroids (section Ancient and de novo ...by 16S rRNA (section Pandoravirus’ Miniature Inverted- Repeat Transposable Elements, Mite) and some Mimivirus ...
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Detection of rRNA synthesis sites within reptilian nucleoli
... of rRNA gene transcription, confirming previous observations realized on the tricompartimentalized nucleolus of mammalian ...of rRNA synthesis within the bicompartimentalized ...
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Predictive microbiology combined with metagenomic analysis targeted on the 16S rDNA : A new approach for food quality
... METHODS White pudding samples, a typical Belgian pork meat product, were packed under food wrap (atmospheric air condition). Durability studies were conducted at 4°C, 12°C and a dynamic temperature profile according to ...
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