RNA-expression
Genetic variability in MCF-7 sublines: evidence of rapid genomic and RNA expression profile modifications.
... Data presented here document that different MCF-7 vari- ants underwent divergence at both the genomic and the RNA expression levels. Furthermore, they indicate that this can occur rapidly according to the ...
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Combining an original method for preserving RNA expression in situ with an effetive RNA method makes it possible to study gene expression in any banana fruit tissue.
... similar RNA extraction quality and yield to those obtained after immediate extraction of RNA from fresh crowns (tables II, ...good RNA preservation in leaf tea [25] to complete degradation in cotton ...
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Differential long non-coding RNA expression profiles in human oocytes and cumulus cells
... microRNA expression patterns in human CC samples 76 – 78 ...the expression of genes involved in many functional processes, such as angiogenesis, fatty acid metabolism, inflammation, DNA methylation profile, ...
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Exploring TERRA (TElomeric Repeat-containing RNA) Expression and Regulation During Cell Growth in Saccharomyces cerevisiae
... Luke 2008). For these reasons, TERRA levels are very low in wild-type yeast cells and are not easily detectable by biochemical assays. Hence, studies of TERRA in yeast have often required the use of mutant strains or ...
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Identification of reference genes for normalizing RNA expression in potato roots infected with cyst nematodes
... ipt 4. Differences in STMEO91 expression were compared by the way of a 10000 pairwise fixed reallocation randomization test, computed by the REST 2009 program. As we were working with a small number of samples in ...
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Insights into the regulation of small RNA expression: SarA represses the expression of two sRNAs in Staphylococcus aureus
... scription initiation in srn 3610 sprC and srn 9340. Whereas the absence of SarA correlates with a change in the expres- sion level of at least 120 genes, it has only been shown to directly control the expression ...
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Circadian RNA expression elicited by 3’-UTR IRAlu-paraspeckle associated elements
... Four RNA- binding proteins, including three members of the Drosophila melanogaster behavior human splicing (DBHS) family proteins (NONO, PSPC1 and SFPQ) and RNA-binding motif protein 14 (RBM14) are ...
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RNA-seq analysis of hepatic gene expression of common Pekin, Muscovy, mule and hinny ducks fed ad libitum or overfed
... www.bioinformatics.babraham .ac.uk/projects/fastqc/), adapter trimming, and merging sample sequences, RNA sequences were aligned with STAR aligner (version 2.3.0e [24] on the common duck (Anas platyrhynchos) ...
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RNA imaging in bacteria
... short RNA species, the applications in prokaryotes so far remain ...gene expression ( Table 1) (Nikolakakis et ...single RNA molecules appears for highly expressed ...the RNA density ...
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RNA-seq-based genome reannotation of dermatophyte Arthroderma benhamiae, characterization of its secretome and whole gene expression profile during infection
... Arthroderma benhamiae secreted proteases during infection. SUB6 was the most highly expressed gene encoding a secreted protease during infection in guinea pigs. In addition to SUB6, other A. benhamiae protease genes, ...
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Oocyte expression with injection of purified T7 RNA polymerase.
... also be taken to assess the cell toxicity of high concentration of glycerol for those dilution values that are extremely low. 5. We have frequently observed that the level of protein translation is smaller with the T7 ...
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The Centrality of RNA
... RNA, Gene Regulation, and Transcription Factors Once mRNA was defined as the medium by which information flows from DNA into the cell, the next great question in molecular biology was how this process was ...
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RNA-directed DNA methylation
... whether RNA-directed coding- sequence-methylation has functional consequences, it is evident from both transgene and RNA-virus-experiments that dsRNA can also trigger promoter methylation, which results in ...
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A Staphylococcus aureus small RNA is required for bacterial virulence and regulates the expression of an immune-evasion molecule.
... the expression levels of the Sbi protein is insufficient to account for the SprD virulence phenotype in our animal infection model and imply that SprD has additional target(s) involved in staphylococcal ...
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RNA Base Pairing Determines the Conformations of RNA Inside Spherical Viruses
... that RNA can assume different profiles inside the capsid as the ones presented in ...considers RNA base-pairing and its saturation, ...on RNA primary sequence dictating its secondary and tertiary ...
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Counting RNA pseudoknotted structures
... initio RNA structure prediction problem consists, given a RNA sequence, in find- ing a conformation that the molecule is likely to take in the ...classified RNA structure prediction algorithms ...
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Insights into RNA-processing pathways and associated RNA-degrading enzymes in Archaea
... et al. 2012 ). Interestingly, our searches for RNase R-like members in ar- chaeal genomes identified at least three types of domain or- ganisation (arbitrarily named a, b and c here) with none re- sembling the bacterial ...
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Selective targeting and inhibition of yeast RNA polymerase II by RNA aptamers
... yeast RNA polymerase are highly homologous, in particular the two largest subunits, which rep- resent two thirds of the mass of the enzymes, we analyzed the effect of the FC RNA on the in vitro ...
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Allele-specific binding of RNA-binding proteins reveals functional genetic variants in the RNA
... similar expression levels as UPF1 targets (within +/−30% of ...up-regulated expression upon UPF1 knockdown (KD), compared to controls (binomial ...in expression quantitative trait loci (eQTL) genes ...
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Comparison of normalization methods for differential gene expression analysis in RNA-Seq experiments: A matter of relative size of studied transcriptomes
... mean expression: m u >m d ...mean expression of upregulated genes m u is greater than the mean expression of downregulated genes m d and, in turn, S 2 should also be greater than S 1 ...
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