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protein flexibility

Modeling protein flexibility by distance geometry

Modeling protein flexibility by distance geometry

... Mots-clés : protein conformation, protein flexibility, distance geometry, combinatorial op- timization, protein docking. 1 Introduction The Molecular Distance Geometry Problem (MDGP) is the ...

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In silico prediction of protein flexibility with local structure approach

In silico prediction of protein flexibility with local structure approach

... of protein flexibility (i) not only taken from crystallographic data, but also (ii) from Root Mean Square Fluctuation (RMSFs) observed in Molecular Dynamics ...of protein structures, named Long ...

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Molecular dynamics studies of the nucleoprotein of influenza A virus: role of the protein flexibility in RNA binding

Molecular dynamics studies of the nucleoprotein of influenza A virus: role of the protein flexibility in RNA binding

... between flexibility, RNA binding and RNA-induced oligomeriza- ...each protein in explicit solvent conditions to insure correct electrostatic interactions in these highly charged ...the protein ...

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A Crystal Structure of the Dengue Virus NS5 Protein Reveals a Novel Inter-domain Interface Essential for Protein Flexibility and Virus Replication

A Crystal Structure of the Dengue Virus NS5 Protein Reveals a Novel Inter-domain Interface Essential for Protein Flexibility and Virus Replication

... Results A compact conformation of NS5 from DENV3 with an inter-domain interface dominated by electrostatic interactions Overall, the polypeptide chain of NS5 is well defined in the electron density map, including for ...

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Molecular flexibility in computational protein design: an algorithmic perspective

Molecular flexibility in computational protein design: an algorithmic perspective

... backbone flexibility in CPD methods is essential to improve the accuracy of their predictions and enable more challenging ...of protein flexibility tend to predict sequences with lower energy and to ...

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Protein structure analysis, prediction and flexibility in the light of a structural alphabet

Protein structure analysis, prediction and flexibility in the light of a structural alphabet

... of flexibility 71 PredyFlexy predicts from the sequencethe protein flexibility, this last being defined from data coming from X-ray structures and molecular dynamics simulation ...

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Flow-induced deformations and stress reduction by flexibility

Flow-induced deformations and stress reduction by flexibility

... the flexibility of the individuals is positively correlated to the magnitude of the flow-induced forces in their habitat (Usherwood et ...make flexibility an evolutionary advantage for plants living in ...

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Customers’ flexibility valued in market and regulated environment

Customers’ flexibility valued in market and regulated environment

... with flexibility management tools and flexible loads (as explained in Developments section) as well as that their flexibility will be used by an Energy Service Provider Company in an aggregated ...

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Multi-temporal assessment of power system flexibility requirement

Multi-temporal assessment of power system flexibility requirement

... Context Flexibility has always been required in power systems in order to match supply and demand 1 ...provide flexibility to a power system which may be regrouped in four main categories: flexible ...

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Bankruptcy Cost, Financial Structure and Technological Flexibility Choices

Bankruptcy Cost, Financial Structure and Technological Flexibility Choices

... We study the interactions between the capital structure and the technological flexibility choices of firms in a duopoly. When there are bankruptcy costs, a leveraged firm may modify its strategic choices in order ...

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Rubber smallholders' flexibility No windfall, no crisis

Rubber smallholders' flexibility No windfall, no crisis

... Firstly: farmers can increase the tapping frequency of each mature tree and therefore increase production within one month. This technique is especially suited to clonal plantations15. Technically, an immediate increase ...

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New codes offer more clarity and flexibility

New codes offer more clarity and flexibility

... This publication could be one of several versions: author’s original, accepted manuscript or the publisher’s version. / La version de cette publication peut être l’une des suivantes : la version prépublication de ...

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Wage Flexibility and Contract Structure in Germany

Wage Flexibility and Contract Structure in Germany

... Using data on individuals from the German Socioeconomic Panel for the 1985-1994 period, we find that both the contemporaneous unemployment rate and prior values of the unemployment rate [r] ...

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Profiles Semantics and Matchings Flexibility for Resources Access

Profiles Semantics and Matchings Flexibility for Resources Access

... Abstract Heterogeneity of resources (information, users, hardware devices, etc.) has raised the problem of defining a generic model, which would be used as a basis for describing them in various applications for ...

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Choice deferral, indecisiveness and preference for flexibility

Choice deferral, indecisiveness and preference for flexibility

... Our work also contributes to a literature that explores the connections between incompleteness on the one hand, and preference for flexibility or choice deferral on the other hand. Gerasimou [16] studies a model ...

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Towards more scalability and flexibility for distributed storage systems

Towards more scalability and flexibility for distributed storage systems

... 5.5 Storage server implementation: a single generic fragment and object in memory, and enough generic fragments on disk to cycle through them without ever hitting the disk cache.. 118.[r] ...

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Nonlinear Discrete Observer for Flexibility Compensation of Industrial Robots

Nonlinear Discrete Observer for Flexibility Compensation of Industrial Robots

... Keywords: Observer; Discrete-time; Flexibility compensation; Industrial robot; Real-time implementation. 1. INTRODUCTION Observers are widely used to estimate unknown or unmea- surable variables of linear or ...

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Protein-Protein Interaction in Purple Membrane

Protein-Protein Interaction in Purple Membrane

... The experiments were performed on the IN12 cold- triple-axis spectrometer at the Institut Laue-Langevin (ILL, Grenoble, France). IN12 turned out to be highly suited for elastic and inelastic investigations in oriented ...

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Finding Occurrences of Protein Complexes in Protein-Protein Interaction Graphs

Finding Occurrences of Protein Complexes in Protein-Protein Interaction Graphs

... of protein-protein inter- actions at a genome-wise scale [13,15,27], and comparative analysis tries to determine the extent to which protein networks are conserved among ...

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National building code update to stress design flexibility

National building code update to stress design flexibility

... NATIONAL BUILDING CODE UPDATE TO STRESS DESIGN FLEXIBILITY.. by J.F.[r] ...

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