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Genome annotation

An approach to improved microbial eukaryotic genome annotation

An approach to improved microbial eukaryotic genome annotation

... structural annotation of those novel genomes once sequenced and assembled, in particular if the organism does not have close relatives with well-annotated ...Several annotation pipelines have been developed ...

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A portal for rhizobial genomes: RhizoGATE integrates a Sinorhizobium meliloti genome annotation update with postgenome data

A portal for rhizobial genomes: RhizoGATE integrates a Sinorhizobium meliloti genome annotation update with postgenome data

... meliloti genome was published in 2001, and the Medicago truncatula genome currently is being ...meliloti genome annotation and an update was ...our annotation update to the EMBL and ...

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Proteomics-based Refinement of Deinococcus deserti Genome Annotation Reveals an Unwonted Use of Non-canonical Translation Initiation Codons

Proteomics-based Refinement of Deinococcus deserti Genome Annotation Reveals an Unwonted Use of Non-canonical Translation Initiation Codons

... of genome annotation is a very important parameter for an efficient system biology study of the ...of genome annotation errors such as discovery of unannotated genes; reversal of reading ...

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A computational architecture designed for genome annotation: oak genome sequencing project as a use case

A computational architecture designed for genome annotation: oak genome sequencing project as a use case

... an annotation, we need to combine different sources of evidence ...functional genome annotation pipeline (figure 1) are available through two powerful ...functional annotation using several ...

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Chromatin-state discovery and genome annotation with ChromHMM

Chromatin-state discovery and genome annotation with ChromHMM

... ->TROUBLESHOOTING File Preparation for Enrichment Analyses TIMING 30 min 8 If interested in including external coordinate annotations not already included with ChromHMM in the overlap enrichment analysis of the ...

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Livestock genome annotation: transcriptome and chromatin structure profiling in cattle, goat, chicken and pig

Livestock genome annotation: transcriptome and chromatin structure profiling in cattle, goat, chicken and pig

... animal genome annotation effort, lessons learned from this pilot project confirmed conclusions drawn by the FAANG com- munity regarding the challenges to be addressed in the future [ 12 ...global ...

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BioMercator : A complete framework to integrate QTL, meta-QTL, genome annotation and genome-wide association studies

BioMercator : A complete framework to integrate QTL, meta-QTL, genome annotation and genome-wide association studies

... In the main panel, the genes are drawn in the browser (figure at the top) with little boxes, colored according to their GO annotation. The pie chart (bottom left) depicts the GO of the genes located at the focused ...

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Identification of transcriptional signals in Encephalitozoon cuniculi widespread among Microsporidia phylum: support for accurate structural genome annotation

Identification of transcriptional signals in Encephalitozoon cuniculi widespread among Microsporidia phylum: support for accurate structural genome annotation

... considered as badly predicted, the same study did not show such biases (Table 2). When we consider newly pre- dicted AUG, Kozak sequence analysis shows the same biases in favour of adenine and guanine in position +4 and ...

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Ten steps to get started in Genome Assembly and Annotation

Ten steps to get started in Genome Assembly and Annotation

... a genome annotation pipeline is almost always in GFF ...the genome, but usually not the actual ...the annotation process, the sequence of these fea- tures can however easily be ...and ...

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Chado controller: advanced annotation management with a community annotation system

Chado controller: advanced annotation management with a community annotation system

... ∗ To whom correspondence should be addressed. † Present address: UM2, LIGM, CNRS, UPR IGH 1142, IMGT®, F-34396 Montpellier, France. In conjunction with genome annotation-editing tools such as Apollo (Lewis, ...

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Combined evidence annotation of transposable elements in genome sequences.

Combined evidence annotation of transposable elements in genome sequences.

... TE annotation pipeline that integrates results from multiple homology-based and de novo TE identification ...Apollo genome annotation tool [16], allowing computational evidence to be manually curated ...

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Evaluation of annotation strategies using an entire genome sequence

Evaluation of annotation strategies using an entire genome sequence

... all annotation sets comparable, we had to encode the available information into a structured ...for genome annotation, such as DAS (Dowell et ...

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en fr Automatic image annotation : the case of deforestation Annotation automatique d’images: le cas de la déforestation

... possible to detect deforestation automatically from earth observation (EO) images (Achard et al., 2002; O’Connor et al., 2015). This paper reviews the state of the art of the methods that are used in the domain of ...

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Annotation et visualisation interactives de documents hypermédias

Annotation et visualisation interactives de documents hypermédias

... Le système HES a tout d’abord été acheté par la NASA afin de produire la documentation du programme Apollo. Les évolutions successives du système ont donné lieu à une version commerciale qui a été distribuée sous le nom ...

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Projet TourInFlux. Annotation des expressions temporelles

Projet TourInFlux. Annotation des expressions temporelles

... Un travail similaire a été fait par (Bittar, 2010a) et a démontré que la pré- annotation permettait de grandement réduire le temps d'annotation. Une deuxième piste serait de recruter des annotateurs extérieurs au ...

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Sequencing, annotation and characterization of 17 Mb of chromosome 3B contigs provide novel insights into the wheat genome organization and evolution

Sequencing, annotation and characterization of 17 Mb of chromosome 3B contigs provide novel insights into the wheat genome organization and evolution

... wheat genome structure is limited to the analysis of individual BAC sequences and of random BAC end and plasmid ...complex genome, we have sequenced and completely annotated 136 BAC clones assembled into 12 ...

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Multimodal Annotation of Conversational Data

Multimodal Annotation of Conversational Data

... The annotation process relies on several tools and conventions, most of them elaborated within the framework of the project. In particular, we pro- pose a generic transcription convention, called En- riched ...

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Functional annotation strategy for protein structures: Functional annotation strategy for protein structures

Functional annotation strategy for protein structures: Functional annotation strategy for protein structures

... Keywords: annotation; function; protein structures; prediction Background: The number of available protein sequences has increased drastically during the last decade (472 complete genomes have been sequenced, ...

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Annotation d’éléments dialogiques de l’IHR

Annotation d’éléments dialogiques de l’IHR

... Transcription Par la suite la transcription de ces expériences doit être effectuée. Pour ce faire il y a une étape de traitement audio et vidéo : le sujet évoluant dans les trois pièces de l’appartement Domus, il faut ...

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Annotation : attention, association, contribution

Annotation : attention, association, contribution

... Annotation et citation Soulignons à ce propos le cas particulier de la citation qui est à l’intersection de l’annotation-associative et de l’annotation-contributive. Les théoriciens de la littérature comme ...

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