Genome analysis
Whole genome analysis of a schistosomiasis-transmitting freshwater snail
... The genome of the Neotropical freshwater snail ...for genome analysis of ...glabrata genome likely reveal biological features that define snail species of the genus Biomphalaria as effective ...
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Adaptive estimation for Hawkes processes; application to genome analysis
... Hawkes process, model selection, oracle inequalities, data- driven penalty, minimax risk, adaptive estimation, unknown support, genome analysis.. This is an electronic reprint of the ori[r] ...
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Genome analysis of Marinobacter phage AS1 suggests its close interactions with host Marinobacter sp.
... Genome analysis of Marinobacter phage AS1 suggests its close interactions with host Marinobacter sp.. Sreekumar Aparna, Ammini Parvathi, Angia Sriram Pradeep Ram, Télesphore Sime-Ngando1[r] ...
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Developmental Cycle and Genome Analysis of ``Rubidus massiliensis,'' a New Vermamoeba vermiformis Pathogen
... The paired-end and mate-paired libraries allowed the generation of 1,087,468 and 1,321,408 reads respectively. The genome of R. massiliensis consists of a single chromosome assembled into three contigs (Figure 3) ...
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Genome analysis and genome-wide proteomics of Thermococcus gammatolerans, the most radioresistant organism known amongst the Archaea.
... the same subunits. A subunit involved in proton translocation is duplicated (Mhy2C and Mhy2C'), resulting in the presence of three such homologous subunits taking into account Mhy2D. This feature resembles that of ...
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The Cancer Genome Atlas Pan-Cancer analysis project
... cross-tumor analysis will increase as technologies for monitoring indi- vidual tumor cells at high resolution come into ...of genome sequenc- ing has fallen, the next Pan-Cancer enter- prise will be able to ...
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Extended diversity analysis of cultivated grapevine Vitis vinifera with 10K genome-wide SNPs
... Conclusions The currently available large number of markers spread all over the whole genome opens new prospects for a better understanding of V. vinifera evolutionary history and diversity, and also to advance ...
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Genome-scale analysis of Mycoplasma agalactiae loci involved in interaction with host cells
... Abstract Mycoplasma agalactiae is an important pathogen of small ruminants, in which it causes contagious agalactia. It belongs to a large group of ‘‘minimal bacteria’’ with a small genome and reduced metabolic ...
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Phylogenetic analysis of Hemileia vastatrix and related taxa using a genome-scale approach
... RESULTS AND DISCUSSION From the orthology assessment strategy employed in this work, 378 clusters (single-copy orthologs) were identified after the initial processing of the MCL output, completion with EST data and ...
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Genome-wide gene expression analysis during <em>solea sp.</em> embryo-larval development
... – ~150.000 have a length >500 bp – 150.000/120.000 (22%) have identified orthologues • This has allowed the development of several tools suitable for genes expression analysis (µarray, openarray) and has made ...
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Combined analysis of three genome-wide association studies on vWF and FVIII plasma levels.
... Interestingly, we had previously shown that STAB2 was located within a linkage peak for vWF levels in our FVL extended families [9] while almost concomitantly STAB2 SNPs were found associated with both FVIII and vWF in ...
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Genome-Wide Analysis of Long Non-Coding RNA Profiles in Canine Oral Melanomas
... module analysis and the differentially expressed lncRNAs, for each separate ...our analysis on the pairwise comparisons between golden retrievers and ...the analysis of the poodle breed produced a ...
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A toolbox for epitope-tagging and genome-wide location analysis in Candida albicans
... The HA and MYC epitope tags have been used to tag pro- teins in various organisms and for various applications [27,28]. They represent highly immunogenic peptides with little biological activity that can then be used in ...
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GATB: Genome Assembly & Analysis Tool Box
... GATB: Genome Assembly & Analysis Tool Box Erwan Drezen 1 , Guillaume Rizk 1 , Rayan Chikhi 2 , Charles Deltel 1 , Claire Lemaitre 1 , Pierre Peterlongo 1 and Dominique Lavenier 1 1 INRIA/IRISA/GenScale, ...
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Le genome leishmanien kinetoplastique
... Any modification of this last, may lead (pull) to changes quite impressive in the clinical expression of a given pathology.In the case of the leishmaniasis, the responsible parasite has [r] ...
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Analysis of Somatic Alterations in Cancer Genome: From SNP Arrays to Next Generation Sequencing
... reference genome, providing coverage of each genomic position by a number of short fragments ...the genome characterizes CNV profile; reads covering known annotated SNP positions could be used to obtain BAF ...
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Culex genome is not just another genome for comparative genomics
... A model for studying the detoxification system in mosquitoes Despite the availability of a wealth of information on insecticide resistance (IR) genomics in public domains, there is still a gap in understanding ...
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Meta-analysis of 20 genome-wide linkage studies evidenced new regions linked to asthma and atopy.: Asthma and atopy genome linkage scan meta-analyses
... 20 genome linkage scans conducted for asthma, BHR and five atopy- related phenotypes has identified several chromosomal regions that are likely to harbour genes involved in ...provided genome-wide evidence ...
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Identification of genetic determinants of breast cancer immune phenotypes by integrative genome-scale analysis
... reported that the expression of representative genes related with immune infiltration e.g., CCR7, CD2, CD3E, LY9, PRF1 was overall the highest in Basal-like tumors.79 However, when sample[r] ...
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Combinatorial Patterning of Chromatin Regulators Uncovered by Genome-wide Location Analysis in Human Cells
... a genome- wide profile and is thus appropriate for screening antibodies and ChIP conditions for difficult targets or for perturbation screens using RNA interference or small ...
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