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Gene Expression Analysis

The impact of gene expression analysis on the classification and prediction of patients’ medical conditions

The impact of gene expression analysis on the classification and prediction of patients’ medical conditions

... Gene expression analyses have been applied in many other kinds of cancer /cancer subtype ...whether gene expression profiling, coupled with class prediction methodology, can classify high- ...

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Gene Expression Analysis Reveals Genes Common to Cerebral Malaria and Neurodegenerative Disorders

Gene Expression Analysis Reveals Genes Common to Cerebral Malaria and Neurodegenerative Disorders

... Whole-Transcriptome Analysis The samples of high-quality RNA were marked with Cy3 fluo- rescent dye, and then they were hybridized using the SurePrint G3 Human Gene Expression 8 × 60K microarray kit, ...

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In planta gene expression analysis of Xanthomonas oryzae pathovar oryzae, African strain MAI1

In planta gene expression analysis of Xanthomonas oryzae pathovar oryzae, African strain MAI1

... in gene expression of the African Xoo strain MAI1 in the susceptible rice cultivar Nipponbare were profiled, using an SSH Xoo DNA ...down-regulated. Expression profiling indicated that less than 20% ...

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Transcriptome characterization analysis of Bactrocera minax and new insights into its pupal diapause development with gene expression analysis

Transcriptome characterization analysis of Bactrocera minax and new insights into its pupal diapause development with gene expression analysis

... reverse expression patterns for catalytic, transporter, tran- scription regulator, translation regulator and antiox- idant activities, which related to diapause entry and preparation to resume ...responsive ...

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The Gene Expression Analysis of Blood Reveals S100A11 and AQP9 as Potential Biomarkers of Infective Endocarditis

The Gene Expression Analysis of Blood Reveals S100A11 and AQP9 as Potential Biomarkers of Infective Endocarditis

... AQP9 gene is overexpressed in the valvular tissue of IE patients and that the AQP9 protein is expressed in endothelial cells lining the lumen of neo-vessels ...the expression of the AQP9 gene and ...

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Genome-wide gene expression analysis during solea sp. embryo-larval development

Genome-wide gene expression analysis during <em>solea sp.</em> embryo-larval development

... – ~150.000 have a length >500 bp – 150.000/120.000 (22%) have identified orthologues • This has allowed the development of several tools suitable for genes expression analysis (µarray, openarray) and has ...

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Quantitative hormone receptor (HR) expression and gene expression analysis in HR+ inflammatory breast cancer (IBC) vs non-IBC

Quantitative hormone receptor (HR) expression and gene expression analysis in HR+ inflammatory breast cancer (IBC) vs non-IBC

... Supplementary information Supplementary information accompanies this paper at https://doi.org/10. 1186/s12885-020-06940-z . Additional file 1: Figure S1. CONSORT diagram. Figure S2. Scatter plot of ER% and PR% in IBC and ...

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Gene expression analysis of flax seed development

Gene expression analysis of flax seed development

... vegetative tissues, DGAT expression in vegetative tissues is too low to detect with the EST counts. Desaturation is the key step that results in the desirable omega-3 and omega-6 fatty acids [44]. This seems to ...

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Common disease signatures from gene expression analysis in Huntington’s disease human blood and brain

Common disease signatures from gene expression analysis in Huntington’s disease human blood and brain

... different gene products in different cell types, also considering that our current knowledge may have dif- ferent gaps across cell ...different gene products carry out the same function is hemoglobin and ...

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Game Theory applied to gene expression analysis

Game Theory applied to gene expression analysis

... the analysis or from strong assumptions about the reference population from which the sam- ples are ...a gene expression ...each gene in associating the expressions of coalitions with the ...

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Data mining techniques for large-scale gene expression analysis

Data mining techniques for large-scale gene expression analysis

... The ranked data is often useful when mining the database for phenotypic trends across large sets of samples [47] (e.g., clustering sam- ples related to particular tumo[r] ...

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Blood Gene Expression Predicts Bronchiolitis Obliterans Syndrome

Blood Gene Expression Predicts Bronchiolitis Obliterans Syndrome

... microarray gene expression profiling of whole blood to identify early biomarkers of BOS, including samples from 49 patients with stable function for at least 3 years, 32 samples collected at least 6 months ...

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Unsupervised Bayesian linear unmixing of gene expression microarrays

Unsupervised Bayesian linear unmixing of gene expression microarrays

... image analysis (see [13] for example), is one of many possible factor analysis methods that could be applied to gene expression ...component analysis (ICA) [15], Bayesian decomposition ...

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Spectral analysis of gene expression profiles using gene networks

Spectral analysis of gene expression profiles using gene networks

... the gene expression analysis process, and several attempts have been carried out in that direction so ...for gene expression from an a priori model of gene networks; for example, ...

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A Comprehensive Analysis of Gene Expression Changes Provoked by Bacterial and Fungal Infection in C. elegans

A Comprehensive Analysis of Gene Expression Changes Provoked by Bacterial and Fungal Infection in C. elegans

... Cross-platform comparison of transcriptionally regulated genes We first used WormBase Converter to generate coherent data sets for our results from RNA-seq and cDNA-, oligo- and tiling arrays, with the WormBase WS210 ...

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Gene Expression Profiling of Solitary Fibrous Tumors

Gene Expression Profiling of Solitary Fibrous Tumors

... Whole-genome expression profiling of SFTs and ...mRNA expression level across the samples ...a gene and each column a sample. Expression levels are depicted according to the color scale shown ...

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Chromosomal profiles of gene expression in Huntington's disease.

Chromosomal profiles of gene expression in Huntington's disease.

... unsupervised analysis instead of a group comparison was consequential to the hypotheses to be ...Unsupervised analysis (factor analysis in the instance considered here) allows the identification and ...

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Increasing stability and interpretability of gene expression signatures

Increasing stability and interpretability of gene expression signatures

... We assess the relevance of a new method named the graph Lasso, pro- posed recently by Jacob et al. (2009), to automatically learn such a signa- ture given a training set of expression data and a gene ...

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Sequence analysis of the ARG7 gene of Schizosaccharomyces pombe coding for argininosuccinate lyase. Expression of the gene in Saccharomyces cerevisiae.

Sequence analysis of the ARG7 gene of Schizosaccharomyces pombe coding for argininosuccinate lyase. Expression of the gene in Saccharomyces cerevisiae.

... The transcription initiation sites have been determined by primer extension using as a primer a 19 b oligonucle-... Northern blots of RNA prepared from S.[r] ...

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Deep learning benchmarks on L1000 gene expression data

Deep learning benchmarks on L1000 gene expression data

... We compare traditional classifiers, including feed-forward artificial neural net- works (FF-ANNs), linear methods, random forests, decision trees, and K nearest neighbo[r] ...

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