Differential gene expression analysis
Optimization of an RNA-Seq Differential Gene Expression Analysis Depending on Biological Replicate Number and Library Size
... of gene expressions for, for example, differential expression (DE) ...DE analysis of RNA-Seq data, this article focuses on the impact of both the replicate number and library size in such ...
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Comparison of normalization methods for differential gene expression analysis in RNA-Seq experiments: A matter of relative size of studied transcriptomes
... the analysis of high-throughput sequencing data are yet to be ...of differential gene expression ...the differential expression ...the gene expression ...
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Statistical modelling for differential gene expression studies: variance-covariance models, sequential and meta-analysis.
... 2.3 Application to INRA datasets Variance-covariance modelling has provided an interesting extension of the structural model for variances presented in Chapter 1. Unfortunately for us, we were not able to apply ...
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Analysis of prolactin-modulated gene expression profiles during the Nb2 cell cycle using differential screening techniques.
... and differential screening of candidate genes In this technique, nylon filters dotted with candidate genes are hybridized with complex cDNA probes from different cell populations, to compare expression ...
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Probe-level linear model fitting and mixture modeling results in high accuracy detection of differential gene expression
... RMA expression summary [5], quantile normalization [14] and absolute fold-change ordering; 3) the FARMS summarization method, with the ordering obtained from either the abso- lute fold-change or by applying the ...
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Differential immune gene expression associated with contemporary range expansion of two invasive rodents in Senegal
... log expression Rle normalization factors 54 ...the analysis: we compare the four recently invaded versus the four anciently invaded regions, and here the four samples per condition are independent from each ...
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Differential gene expression profiling of human bone marrow-derived mesenchymal stem cells during adipogenic development.
... the expression profile of genes involved during maturation and adipogenic ...for gene expression profiling ana- lysis during adipogenic ...the analysis of expression of specific genes, ...
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Analysis of gene expression patterns during seed coat development in Arabidopsis
... in gene expression for 4-5 cell types are detected whereas when comparing mutant versus wild type only changes in the small number of cell types affected by the mutation (endothelium or epidermis/palisade) ...
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Analysis of Genetically Regulated Gene Expression Identifies a Prefrontal PTSD Gene, SNRNP35, Specific to Military Cohorts
... tissue-specific gene expression, we use brain and non-brain transcriptomic ...regulated gene expression (GReX) in 29,539 PTSD cases and 166,145 controls from 70 ancestry-specific cohorts and ...
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Early differential gene expression in haemocytes from resistant and susceptible Biomphalaria glabrata strains in response to Schistosoma mansoni
... makes analysis of global gene expression a vital component of research aimed at elucidating the array of underlying mechanisms of snail-schistosome ...
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Early differential gene expression in haemocytes from resistant and susceptible Biomphalaria glabrata strains in response to Schistosoma mansoni
... makes analysis of global gene expression a vital component of research aimed at elucidating the array of underlying mechanisms of snail-schistosome ...
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Blood Gene Expression Predicts Bronchiolitis Obliterans Syndrome
... BLK expression are associated with several autoimmune diseases via lowering the threshold for B cell activation ( 54 ...downstream expression of cytokines and chemokines and the nuclear factor- κB ...
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Gene expression comparison reveals distinct basal expression of HOX members and differential TNF-induced response between brain- and spinal ă cord-derived microvascular endothelial cells
... (MMP9) expression [25], which is in line with its higher expression in SCMVs ...transcript analysis study revealed shared and differential patterns of Hox gene expression between ...
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Common disease signatures from gene expression analysis in Huntington’s disease human blood and brain
... ubiquitous expression of the mutant protein, the HD phenotype is not limited to the ...significant differential expression [5]. Investigating gene expression changes in peripheral ...
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Differential gene expression of the honey bee Apis mellifera associated with Varroa destructor infection
... in gene expression For most of the genes showing significant differences in expression in the present study, the magnitude of these differences was ...underestimate gene expres- sion changes ...
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Gene expression profiling in sinonasal adenocarcinoma.
... data analysis Scanned signals were quantified from all microarrays by GenePix Pro software version ...consolidated expression values were performed by MADSCAN software in five steps ...comparison ...
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Characterization of tissue-specific differential DNA methylation suggests distinct modes of positive and negative gene expression regulation
... respectively. An additional 75 motifs are associated with both positive and negative T-DMRs, which we termed “dual” motifs. The results suggest that positive and negative regulations are largely governed by distinct TFs ...
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Differential miRNA-Gene Expression in M Cells in Response to Crohn’s Disease-Associated AIEC
... and gene expression in IECs and M cells upon AIEC infection have not been ...and gene profiling under basal condition and upon infection with the reference AIEC LF82 ...Both differential ...
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Spectral analysis of gene expression profiles using gene networks
... a gene is involved, the biologist is often more interested in the biological function than in the single ...the expression of a single gene, but involves the entire set of genes that form the ...
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Differential Gene Expression Profiling of Dystrophic Dog Muscle after MuStem Cell Transplantation
... Histomorphometry analysis was performed on the Biceps femoris muscle of 9-months aged healthy dogs (#1H to #3H), mock GRMD dogs (#4G to #6G) and compared to GRMD MuStem dogs (#7G Mu to #10G Mu ...no ...
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