RNA secondary structure: a comparison of real and random sequences

A weighted sampling algorithm for the design of RNA sequences with targeted secondary structure and nucleotides distribution.. ISMB/ECCB - 21st Annual international conference

It handles several classes of models useful for sequence analysis, such as Markov chains, Hidden Markov models, weighted context-free grammars, regular expressions and

An infinitesimal increase of the volume ∆v brings an increase in p int , so that the piston moves until another equilibrium point with a bigger volume. On the other hand, a

We define a partition of the set of integers k in the range [1, m−1] prime to m into two or three subsets, where one subset consists of those integers k which are < m/2,

Again, a key question is: How do we measure the uniformity of the point set P n ? Standard practice is to use a figure of merit that measures the discrepancy between the

Circles indicate maximum LL of the given matrix, and triangles indicate the best fitting parameters to the real data (that were also used to generate the simulated data).. In this

In Section 3, we introduce the generalized Stern-Brocot intervals in connection with the expansion of real numbers in Rosen con- tinued fractions, which enables us to study the

In Section 3, we introduce the generalized Stern–Brocot intervals in connection with the expansion of real numbers in Rosen continued fractions, which enables us to study the